miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00674;mir-187;AAEX02026401.1/29363-29466 9615:Canis lupus
familiaris (dog)
Length = 104
Score = 135 bits (68), Expect = 7e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 ctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 85
Query: 61 ggagggac 68
||||||||
Sbjct: 86 ggagggac 93
>RF00674;mir-187;ABRT010481208.1/1422-1525 9478:Tarsius syrichta
(Philippine tarsier)
Length = 104
Score = 111 bits (56), Expect = 1e-24
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 5 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccggag 64
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 30 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccggag 89
Query: 65 ggac 68
||||
Sbjct: 90 ggac 93
>RF00674;mir-187;CAAA01044840.1/745-848 10090:Mus musculus (house
mouse)
Length = 104
Score = 111 bits (56), Expect = 1e-24
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 5 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccggag 64
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 30 ggctacaacacaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagccggag 89
Query: 65 ggac 68
||||
Sbjct: 90 ggac 93
>RF00674;mir-187;AAYZ01085202.1/4617-4513 9978:Ochotona princeps
(American pika)
Length = 105
Score = 111 bits (56), Expect = 1e-24
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 ctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 60
||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 27 ctcgggctacaacccaggacccgggcgctgctctgacccctcgtgtcttgtgttgcagcc 86
Query: 61 ggagggac 68
||||||||
Sbjct: 87 ggagggac 94
>RF00674;mir-187;AAGU02088398.1/1497-1394 9785:Loxodonta africana
(African savanna elephant)
Length = 104
Score = 103 bits (52), Expect = 3e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 1 ctcgggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagcc 60
||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 26 ctcgggctacaacacaggacccgggtgctgctctgacccctcgtgtcttgtgttgcagcc 85
Query: 61 ggagggac 68
|| |||||
Sbjct: 86 ggggggac 93
>RF00674;mir-187;AAKN02020391.1/22749-22852 10141:Cavia porcellus
(domestic guinea pig)
Length = 104
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 4 gggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccgga 63
|||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 29 gggctacaacacaggacccgggcgctgatttgacccctcgtgtcttgtgttgcagccgga 88
Query: 64 gggac 68
|||||
Sbjct: 89 gggac 93
>RF00674;mir-187;AADN02008126.1/227633-227736 9031:Gallus gallus
(chicken)
Length = 104
Score = 52.0 bits (26), Expect = 9e-07
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 5 ggctacaacacgggacccgggcgctgctccgacccctcgtgtcttgtgttgcagccggag 64
||||||||||| |||| ||| ||| || || ||||||||||||||||||||||| |||
Sbjct: 30 ggctacaacacaggacatgggagcttttctgaaccctcgtgtcttgtgttgcagccagag 89
Query: 65 gg 66
||
Sbjct: 90 gg 91
>RF00674;mir-187;AAWZ01027996.1/55264-55367 28377:Anolis
carolinensis (green anole)
Length = 104
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 38 ccctcgtgtcttgtgttgcagccggaggg 66
||||||||||||||||||||||| |||||
Sbjct: 63 ccctcgtgtcttgtgttgcagccagaggg 91
>RF00674;mir-187;AAPN01052341.1/8485-8382 9258:Ornithorhynchus
anatinus (platypus)
Length = 104
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 38 ccctcgtgtcttgtgttgcagccggagg 65
||||||||||||||||||||||| ||||
Sbjct: 63 ccctcgtgtcttgtgttgcagccagagg 90
>RF00674;mir-187;BX927241.19/109900-110007 7955:Danio rerio
(zebrafish)
Length = 108
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 ctcgtgtcttgtgttgcagcc 60
|||||||||||||||||||||
Sbjct: 69 ctcgtgtcttgtgttgcagcc 89
>RF00674;mir-187;CAAB01000566.1/61799-61691 31033:Takifugu
rubripes
Length = 109
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 ctcgtgtcttgtgttgcagcc 60
|||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90
>RF00674;mir-187;BAAF04062858.1/307-199 8090:Oryzias latipes
(Japanese medaka)
Length = 109
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 ctcgtgtcttgtgttgcagcc 60
|||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90
