miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33283_bta-mir-205:mirbase
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
Query: 61 gttcaggag 69
|||||||||
Sbjct: 61 gttcaggag 69
>27091_eca-mir-205:mirbase
Length = 69
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 60
Query: 61 gttcaggag 69
|||||||||
Sbjct: 61 gttcaggag 69
>27583_lla-mir-205:mirbase
Length = 110
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 28 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 87
Query: 61 gttcaggag 69
|||||||||
Sbjct: 88 gttcaggag 96
>27802_mml-mir-205:mirbase
Length = 110
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 28 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 87
Query: 61 gttcaggag 69
|||||||||
Sbjct: 88 gttcaggag 96
>28233_mne-mir-205:mirbase
Length = 110
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 28 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 87
Query: 61 gttcaggag 69
|||||||||
Sbjct: 88 gttcaggag 96
>28329_ggo-mir-205:mirbase
Length = 110
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 28 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 87
Query: 61 gttcaggag 69
|||||||||
Sbjct: 88 gttcaggag 96
>28524_hsa-mir-205:mirbase
Length = 110
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 28 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 87
Query: 61 gttcaggag 69
|||||||||
Sbjct: 88 gttcaggag 96
>30117_ppa-mir-205:mirbase
Length = 110
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 28 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 87
Query: 61 gttcaggag 69
|||||||||
Sbjct: 88 gttcaggag 96
>30283_ptr-mir-205:mirbase
Length = 110
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 28 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 87
Query: 61 gttcaggag 69
|||||||||
Sbjct: 88 gttcaggag 96
>30901_ppy-mir-205:mirbase
Length = 109
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 28 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 87
Query: 61 gttcaggag 69
|||||||||
Sbjct: 88 gttcaggag 96
>34035_ssc-mir-205:mirbase
Length = 69
Score = 121 bits (61), Expect = 6e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 60
Query: 61 gttcaggag 69
| |||||||
Sbjct: 61 gctcaggag 69
>27518_age-mir-205:mirbase
Length = 109
Score = 115 bits (58), Expect = 4e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 28 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 87
Query: 61 gt 62
||
Sbjct: 88 gt 89
>25997_gga-mir-205a:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 4 ttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaag 61
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 19 ttgtccttcattccaccggagtctgtctcgtacctaaccagatttcagtggagtgaag 76
>31531_oan-mir-205:mirbase
Length = 108
Score = 91.7 bits (46), Expect = 6e-20
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 4 ttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaag 61
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct: 28 ttgtccttcattccaccggagtctgtttcgtacctaatcagatttcagtggagtgaag 85
>31931_mmu-mir-205:mirbase
Length = 68
Score = 89.7 bits (45), Expect = 2e-19
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 ctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaa 60
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 1 ctcttgtccttcattccaccggagtctgtcttat-gccaaccagatttcagtggagtgaa 59
Query: 61 gttcaggag 69
| |||||||
Sbjct: 60 gctcaggag 68
>27423_mdo-mir-205a:mirbase
Length = 72
Score = 85.7 bits (43), Expect = 4e-18
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 3 cttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaag 61
|||||||||||||||||||||||||||||| || | || ||||||||||||||||||||
Sbjct: 1 cttgtccttcattccaccggagtctgtctcatatctaatcagatttcagtggagtgaag 59
>25827_xtr-mir-205a:mirbase
Length = 86
Score = 81.8 bits (41), Expect = 6e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 5 tgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaag 61
|||||||||||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct: 14 tgtccttcattccaccggagtctgtctcatacataatcagatttcagtggagtgaag 70
>32795_rno-mir-205:mirbase
Length = 108
Score = 81.8 bits (41), Expect = 6e-17
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 5 tgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaagttc 64
||||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||
Sbjct: 31 tgtccttcattccaccggagtctgtcttatgcc-aaccagatttcagtggagtgaagctc 89
Query: 65 aggag 69
|||||
Sbjct: 90 aggag 94
>25668_xla-mir-205:mirbase
Length = 86
Score = 73.8 bits (37), Expect = 1e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 5 tgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtgaag 61
|||||||||||||||||||||||||||| ||| || ||||||||||| ||||||||
Sbjct: 14 tgtccttcattccaccggagtctgtctcatacataatcagatttcagtagagtgaag 70
>25523_pma-mir-205a:mirbase
Length = 75
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 gtccttcattccaccggagtctgtc 30
|||||||||||||||||||||||||
Sbjct: 9 gtccttcattccaccggagtctgtc 33
>34633_fru-mir-205:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 2e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 7 tccttcattccaccggagtctgtct-cgtacccaaccagatttcagtggagtgaagt 62
||||||||||||||||||||||| | ||| |||||||||||||||| |||||||
Sbjct: 10 tccttcattccaccggagtctgtatgtgtatttaaccagatttcagtggtgtgaagt 66
>34363_dre-mir-205:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 tccttcattccaccggagtctgt 29
|||||||||||||||||||||||
Sbjct: 19 tccttcattccaccggagtctgt 41
>34781_tni-mir-205:mirbase
Length = 66
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 tccttcattccaccggagtctgt 29
|||||||||||||||||||||||
Sbjct: 3 tccttcattccaccggagtctgt 25
>25524_pma-mir-205b:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 ccttcattccaccggagtctgt 29
||||||||||||||||||||||
Sbjct: 8 ccttcattccaccggagtctgt 29
>25828_xtr-mir-205b:mirbase
Length = 72
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5 tgtccttcattccaccgga 23
|||||||||||||||||||
Sbjct: 7 tgtccttcattccaccgga 25
>25998_gga-mir-205b:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 ccttcattccaccggagtctgtc 30
|||||||||||||||| ||||||
Sbjct: 27 ccttcattccaccggaatctgtc 49
>26508_tgu-mir-205:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 ccttcattccaccggagtctgtc 30
|||||||||||||||| ||||||
Sbjct: 14 ccttcattccaccggaatctgtc 36
