miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AP009482.1/51635-51503 4081:Solanum lycopersicum
Length = 133
Score = 54.0 bits (27), Expect = 8e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 42 ctttgtttattagccaaggatgacttgccta 72
||||||| |||||||||||||||||||||||
Sbjct: 123 ctttgttaattagccaaggatgacttgccta 93
>RF00645;MIR169_2;AP009482.1/51508-51629 4081:Solanum lycopersicum
Length = 122
Score = 54.0 bits (27), Expect = 8e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 42 ctttgtttattagccaaggatgacttgccta 72
||||||| |||||||||||||||||||||||
Sbjct: 6 ctttgttaattagccaaggatgacttgccta 36
>RF00865;MIR169_5;ABIM01001939.1/16104-16248 3649:Carica papaya
(papaya)
Length = 145
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 36 aagagtctttgtttattagccaaggatgacttgccta 72
||||||| |||||| |||||||||||||||||||||
Sbjct: 140 aagagtcattgtttggtagccaaggatgacttgccta 104
>RF00865;MIR169_5;ABXC01004203.1/1754-1629 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 52 tagccaaggatgacttgcctacat 75
||||||||||||||||||||||||
Sbjct: 106 tagccaaggatgacttgcctacat 83
>RF00645;MIR169_2;AC146747.7/125787-125634 3880:Medicago
truncatula (barrel medic)
Length = 154
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 tgtttattagccaaggatgacttgccta 72
||||||| ||||||||||||||||||||
Sbjct: 6 tgtttataagccaaggatgacttgccta 33
>RF00645;MIR169_2;ABXC01004203.1/1636-1748 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 tagccaaggatgacttgcctacat 75
||||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctacat 37
>RF00865;MIR169_5;AB016889.1/45011-45196 3702:Arabidopsis thaliana
(thale cress)
Length = 186
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 45 tgtttattagccaaggatgacttgcct 71
|||||| ||||||||||||||||||||
Sbjct: 174 tgtttagtagccaaggatgacttgcct 148
>RF00865;MIR169_5;AB016889.1/38805-38989 3702:Arabidopsis thaliana
(thale cress)
Length = 185
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 45 tgtttattagccaaggatgacttgcct 71
|||||| ||||||||||||||||||||
Sbjct: 173 tgtttagtagccaaggatgacttgcct 147
>RF00865;MIR169_5;AY551203.1/210-25 3702:Arabidopsis thaliana (thale
cress)
Length = 186
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 45 tgtttattagccaaggatgacttgcct 71
|||||| ||||||||||||||||||||
Sbjct: 174 tgtttaatagccaaggatgacttgcct 148
>RF00865;MIR169_5;ABXC01004204.1/1140-1015 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 52 tagccaaggatgacttgcctaca 74
|||||||||||||||||||||||
Sbjct: 106 tagccaaggatgacttgcctaca 84
>RF00645;MIR169_2;AY551201.1/49-220 3702:Arabidopsis thaliana
(thale cress)
Length = 172
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tgtttattagccaaggatgacttgcct 71
|||||| ||||||||||||||||||||
Sbjct: 6 tgtttagtagccaaggatgacttgcct 32
>RF00645;MIR169_2;AY551203.1/30-206 3702:Arabidopsis thaliana
(thale cress)
Length = 177
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tgtttattagccaaggatgacttgcct 71
|||||| ||||||||||||||||||||
Sbjct: 8 tgtttaatagccaaggatgacttgcct 34
>RF00645;MIR169_2;AB016889.1/45191-45017 3702:Arabidopsis thaliana
(thale cress)
Length = 175
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tgtttattagccaaggatgacttgcct 71
|||||| ||||||||||||||||||||
Sbjct: 8 tgtttagtagccaaggatgacttgcct 34
>RF00645;MIR169_2;ABXC01004204.1/1022-1134 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 tagccaaggatgacttgcctaca 74
|||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctaca 36
>RF00645;MIR169_2;ABIM01001939.1/16240-16110 3649:Carica papaya
(papaya)
Length = 131
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 39 agtctttgtttattagccaaggatgacttgccta 72
|||| |||||| |||||||||||||||||||||
Sbjct: 1 agtcattgtttggtagccaaggatgacttgccta 34
