miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33287_bta-mir-210:mirbase
Length = 98
Score = 186 bits (94), Expect = 2e-48
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 1 cctccaggcgcagggcagccactgcccatcgcacactgcgctgctccggacccactgtgc 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 cctccaggcgcagggcagccactgcccaccgcacactgcgctgctccggacccactgtgc 60
Query: 61 gtgtgacagcggctgatctgtccctgggcagcgcgacc 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtgacagcggctgatctgtccctgggcagcgcgacc 98
>31937_mmu-mir-210:mirbase
Length = 110
Score = 159 bits (80), Expect = 5e-40
Identities = 92/96 (95%)
Strand = Plus / Plus
Query: 1 cctccaggcgcagggcagccactgcccatcgcacactgcgctgctccggacccactgtgc 60
||||||||| |||| ||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 12 cctccaggctcaggacagccactgcccaccgcacactgcgttgctccggacccactgtgc 71
Query: 61 gtgtgacagcggctgatctgtccctgggcagcgcga 96
||||||||||||||||||||||||||||||||||||
Sbjct: 72 gtgtgacagcggctgatctgtccctgggcagcgcga 107
>27806_mml-mir-210:mirbase
Length = 110
Score = 155 bits (78), Expect = 7e-39
Identities = 93/98 (94%)
Strand = Plus / Plus
Query: 1 cctccaggcgcagggcagccactgcccatcgcacactgcgctgctccggacccactgtgc 60
|||||||||||||||||||| ||||||| ||||||||||||||| || ||||||||||||
Sbjct: 12 cctccaggcgcagggcagcccctgcccaccgcacactgcgctgccccagacccactgtgc 71
Query: 61 gtgtgacagcggctgatctgtccctgggcagcgcgacc 98
||||||||||||||||||||| ||||||||||||||||
Sbjct: 72 gtgtgacagcggctgatctgtgcctgggcagcgcgacc 109
>28528_hsa-mir-210:mirbase
Length = 110
Score = 155 bits (78), Expect = 7e-39
Identities = 93/98 (94%)
Strand = Plus / Plus
Query: 1 cctccaggcgcagggcagccactgcccatcgcacactgcgctgctccggacccactgtgc 60
|||||||||||||||||||| ||||||| ||||||||||||||| || ||||||||||||
Sbjct: 12 cctccaggcgcagggcagcccctgcccaccgcacactgcgctgccccagacccactgtgc 71
Query: 61 gtgtgacagcggctgatctgtccctgggcagcgcgacc 98
||||||||||||||||||||| ||||||||||||||||
Sbjct: 72 gtgtgacagcggctgatctgtgcctgggcagcgcgacc 109
>30287_ptr-mir-210:mirbase
Length = 109
Score = 155 bits (78), Expect = 7e-39
Identities = 93/98 (94%)
Strand = Plus / Plus
Query: 1 cctccaggcgcagggcagccactgcccatcgcacactgcgctgctccggacccactgtgc 60
|||||||||||||||||||| ||||||| ||||||||||||||| || ||||||||||||
Sbjct: 12 cctccaggcgcagggcagcccctgcccaccgcacactgcgctgccccagacccactgtgc 71
Query: 61 gtgtgacagcggctgatctgtccctgggcagcgcgacc 98
||||||||||||||||||||| ||||||||||||||||
Sbjct: 72 gtgtgacagcggctgatctgtgcctgggcagcgcgacc 109
>32801_rno-mir-210:mirbase
Length = 110
Score = 151 bits (76), Expect = 1e-37
Identities = 91/96 (94%)
Strand = Plus / Plus
Query: 1 cctccaggcgcagggcagccactgcccatcgcacactgcgctgctccggacccactgtgc 60
||||||||| |||| ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 12 cctccaggctcaggacagccactgcccacagcacactgcgttgctccggacccactgtgc 71
Query: 61 gtgtgacagcggctgatctgtccctgggcagcgcga 96
||||||||||||||||||||||||||||||||||||
Sbjct: 72 gtgtgacagcggctgatctgtccctgggcagcgcga 107
>33068_rno-mir-3574:mirbase
Length = 118
Score = 151 bits (76), Expect = 1e-37
Identities = 91/96 (94%)
Strand = Plus / Minus
Query: 1 cctccaggcgcagggcagccactgcccatcgcacactgcgctgctccggacccactgtgc 60
||||||||| |||| ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 105 cctccaggctcaggacagccactgcccacagcacactgcgttgctccggacccactgtgc 46
Query: 61 gtgtgacagcggctgatctgtccctgggcagcgcga 96
||||||||||||||||||||||||||||||||||||
Sbjct: 45 gtgtgacagcggctgatctgtccctgggcagcgcga 10
>34038_ssc-mir-210:mirbase
Length = 76
Score = 143 bits (72), Expect = 3e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 8 gcgcagggcagccactgcccatcgcacactgcgctgctccggacccactgtgcgtgtgac 67
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgcagggcagccactgcccaccgcacactgcgctgctccggacccactgtgcgtgtgac 60
Query: 68 agcggctgatctgtcc 83
||||||||||||||||
Sbjct: 61 agcggctgatctgtcc 76
>27426_mdo-mir-210:mirbase
Length = 82
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 43 gctccggacccactgtgcgtgtgacagcggct 74
|||| |||||||||||||||||||||||||||
Sbjct: 37 gctcaggacccactgtgcgtgtgacagcggct 68
>30905_ppy-mir-210:mirbase
Length = 120
Score = 56.0 bits (28), Expect = 5e-09
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 60 cgtgtgacagcggctgatctgtccctg-ggcagcgcgacc 98
|||||||||||||||||||||| |||| ||||||||||||
Sbjct: 80 cgtgtgacagcggctgatctgtgcctgaggcagcgcgacc 119
>24695_bfl-mir-210:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 ctgtgcgtgtgacagcggctgat 77
|||||||||||||||||||||||
Sbjct: 61 ctgtgcgtgtgacagcggctgat 83
>25831_xtr-mir-210:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ccactgtgcgtgtgacagcggct 74
|||||||||||||||||||||||
Sbjct: 53 ccactgtgcgtgtgacagcggct 75
>34366_dre-mir-210:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ccactgtgcgtgtgacagcggct 74
|||||||||||||||||||||||
Sbjct: 45 ccactgtgcgtgtgacagcggct 67
>34634_fru-mir-210:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ccactgtgcgtgtgacagcggct 74
|||||||||||||||||||||||
Sbjct: 52 ccactgtgcgtgtgacagcggct 74
>34782_tni-mir-210:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 ccactgtgcgtgtgacagcggct 74
|||||||||||||||||||||||
Sbjct: 44 ccactgtgcgtgtgacagcggct 66
>25526_pma-mir-210:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tgtgcgtgtgacagcggctg 75
||||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggctg 68
