miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00646;mir-204;AAGW01512306.1/1681-1580 9986:Oryctolagus
cuniculus (rabbit)
Length = 102
Score = 149 bits (75), Expect = 8e-36
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 1 ctggccatgtgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggc 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6 ctggccatgtgactggtgggcttccctttgtcatcctttgcctagggttctgagcagggc 65
Query: 61 agggacagcaaaggggtgctcagttgtcacc 91
|||||||||||||||||||||||| ||||||
Sbjct: 66 agggacagcaaaggggtgctcagtcgtcacc 96
>RF00646;mir-204;ABRQ01444608.1/1068-1169 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 147 bits (74), Expect = 3e-35
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 4 gccatgtgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggcagg 63
|||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 9 gccatgtgacctgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagg 68
Query: 64 gacagcaaaggggtgctcagttgtcacctc 93
|||||||||||| |||||||||||||||||
Sbjct: 69 gacagcaaagggctgctcagttgtcacctc 98
>RF00646;mir-204;AAQQ01222771.1/904-1005 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 102
Score = 143 bits (72), Expect = 5e-34
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 6 catgtgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggcaggga 65
|||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct: 11 catgtgacttgtgggcttccctttgtcatcctttgcctagggctttgagtggggcaggga 70
Query: 66 cagcaaaggggtgctcagttgtcacctc 93
||||||||||||||||||| ||||||||
Sbjct: 71 cagcaaaggggtgctcagtcgtcacctc 98
>RF00646;mir-204;AY866210.1/448-549 9600:Pongo pygmaeus (Bornean
orangutan)
Length = 102
Score = 133 bits (67), Expect = 5e-31
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 4 gccatgtgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggcagg 63
|||||||||||||||| |||||||||||||||||| |||||||| |||||| |||||||
Sbjct: 9 gccatgtgacttgtggacttccctttgtcatccttcgcctagggctctgagcagggcagg 68
Query: 64 gacagcaaaggggtgctcagttgtcac 90
|||||||||||||||||||||||||||
Sbjct: 69 gacagcaaaggggtgctcagttgtcac 95
>RF00646;mir-204;AANN01198559.1/1392-1493 9365:Erinaceus europaeus
(western European hedgehog)
Length = 102
Score = 119 bits (60), Expect = 7e-27
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 8 tgtgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggcagggaca 67
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 13 tgtgacttgtgggcttccctttgtcatcctttgcctagggttatgagtagggcagggaca 72
Query: 68 gcaaaggggtgc 79
||||||||||||
Sbjct: 73 gcaaaggggtgc 84
>RF00646;mir-204;AAKN02016253.1/66521-66421 10141:Cavia porcellus
(domestic guinea pig)
Length = 101
Score = 119 bits (60), Expect = 7e-27
Identities = 82/88 (93%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 4 gccatgtgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggcagg 63
|||| ||||||||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct: 9 gccacgtgacttgtgggcttccctttgtcatcctttgcctagggctctgata-gggcagg 67
Query: 64 gacagcaaaggggtgctcagttgtcacc 91
||| |||||||||| |||||||||||||
Sbjct: 68 gactgcaaaggggtactcagttgtcacc 95
>RF00646;mir-204;AAHY01062369.1/281-180 10090:Mus musculus (house
mouse)
Length = 102
Score = 109 bits (55), Expect = 7e-24
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 8 tgtgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggcagggaca 67
|||||| |||||||||||||||||||||||||||||||| |||||| | |||| |||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctttgcctaggcctctgagtgaggcaaggaca 72
Query: 68 gcaaaggggtgctcagttgtcacctct 94
||||||||| ||||||| |||||||||
Sbjct: 73 gcaaaggggggctcagtggtcacctct 99
>RF00646;mir-204;AAGV020630976.1/4916-5016 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 101
Score = 105 bits (53), Expect = 1e-22
Identities = 84/93 (90%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 ctggccatgtgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggc 60
||||||||| ||| |||||||||||||||||||||||||||||| || || ||| |||||
Sbjct: 6 ctggccatgggacctgtgggcttccctttgtcatcctttgccta-ggatccgagtggggc 64
Query: 61 agggacagcaaaggggtgctcagttgtcacctc 93
||||||| ||||||||||||||| ||||||||
Sbjct: 65 agggacaacaaaggggtgctcaggcgtcacctc 97
>RF00646;mir-204;AAFR03022736.1/24229-24330 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 7 atgtgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggcagggac 66
||||||| ||||||||||||||||||||||| ||||| | || ||| |||||||||||
Sbjct: 12 atgtgacctgtgggcttccctttgtcatcctatgcctggaaatcagagtggggcagggac 71
Query: 67 agcaaaggggtgctcagttgtc 88
||||||||| ||||||| ||||
Sbjct: 72 agcaaagggatgctcagctgtc 93
>RF00646;mir-204;AAWZ01036299.1/27929-27828 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 83.8 bits (42), Expect = 4e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 10 tgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggcagggacagc 69
|||| ||||||||||||||||||||||| ||||| | | || |||| ||||||||||||
Sbjct: 15 tgacctgtgggcttccctttgtcatcctatgcctggagatcgcagagaggcagggacagc 74
Query: 70 aaaggggtgctcag 83
||||||||||||||
Sbjct: 75 aaaggggtgctcag 88
>RF00646;mir-204;AADN02040397.1/21108-21007 9031:Gallus gallus
(chicken)
Length = 102
Score = 73.8 bits (37), Expect = 4e-13
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 8 tgtgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggcagggaca 67
|||||| ||||||||||||||||||||||| ||||| | | || || | ||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
Query: 68 gcaaaggggtgctcagttgtc 88
|||||||| ||||||| ||||
Sbjct: 73 gcaaagggatgctcagctgtc 93
>RF00646;mir-204;CAAE01014555.1/947630-947730 99883:Tetraodon
nigroviridis
Length = 101
Score = 63.9 bits (32), Expect = 4e-10
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 8 tgtgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggcagggaca 67
|||||| ||||||||||||||||||||||| ||||| | | || || | ||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcggata-aggcagggaca 71
Query: 68 gcaaaggggtgctcag 83
|||||||| |||||||
Sbjct: 72 gcaaagggatgctcag 87
>RF00646;mir-204;BAAE01064700.1/3191-3291 8090:Oryzias latipes
(Japanese medaka)
Length = 101
Score = 63.9 bits (32), Expect = 4e-10
Identities = 72/84 (85%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 8 tgtgacttgtgggcttccctttgtcatcctttgcctagggttctgagaggggcagggaca 67
|||||| ||||||||||||||||||||||| ||||| | | | || | ||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagcttggata-aggcagggaca 71
Query: 68 gcaaaggggtgctcagttgtcacc 91
|||||||| ||||||| |||||||
Sbjct: 72 gcaaagggatgctcagctgtcacc 95
>RF00646;mir-204;AAFR03028287.1/51900-52003 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 104
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 5 ccatgtgacttgtgggcttccctttgtcatcctttgcct 43
|||||||||| |||| ||||||||||||||||| |||||
Sbjct: 10 ccatgtgactcgtggacttccctttgtcatcctatgcct 48
>RF00646;mir-204;AANH01001574.1/139065-138965 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 101
Score = 54.0 bits (27), Expect = 3e-07
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 17 tgggcttccctttgtcatcctttgcctagggttctgagaggggcagggacagcaaagggg 76
||||||||||||||||||||| ||||| | | || || | ||||||||||||||||||
Sbjct: 22 tgggcttccctttgtcatcctatgcctggagctcggata-aggcagggacagcaaaggga 80
Query: 77 tgctcagttgtcacc 91
|||||| |||||||
Sbjct: 81 tgctcaactgtcacc 95
>RF00646;mir-204;BX323080.10/77917-77816 7955:Danio rerio
(zebrafish)
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 6 catgtgacttgtgggcttccctttgtcatcctttgcct 43
|||||||| ||||| ||||||||||||||||| |||||
Sbjct: 11 catgtgacctgtggacttccctttgtcatcctatgcct 48
>RF00646;mir-204;AANH01001880.1/194334-194437 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 6 catgtgacttgtgggcttccctttgtcatcctttgcct 43
|||||||||| ||| ||||||||||||||||| |||||
Sbjct: 11 catgtgacttatggccttccctttgtcatcctatgcct 48
>RF00646;mir-204;AANH01011880.1/65628-65527 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 6 catgtgacttgtgggcttccctttgtcatcctttgcct 43
|||||||| ||||| ||||||||||||||||||||||
Sbjct: 11 catgtgacccgtgggtttccctttgtcatcctttgcct 48
>RF00646;mir-204;ABPM01009536.1/476-373 106582:Maylandia zebra
(zebra mbuna)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 4 gccatgtgacttgtgggcttccctttgtcatcctttgcct 43
|||||||||| | ||| ||||||||||||||||| |||||
Sbjct: 9 gccatgtgacatatggacttccctttgtcatcctatgcct 48
>RF00646;mir-204;AAVX01164390.1/969-1070 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 8 tgtgacttgtgggcttccctttgtcatcctttgcct 43
|||||| |||||| |||||||||||||||| |||||
Sbjct: 13 tgtgacctgtgggtttccctttgtcatcctatgcct 48
>RF00646;mir-204;BAAE01000360.1/4392-4495 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 tgggcttccctttgtcatcctttgcct 43
||||||||||||||||||||| |||||
Sbjct: 22 tgggcttccctttgtcatcctatgcct 48
>RF00646;mir-204;AAVX01052255.1/1202-1305 7868:Callorhinchus milii
(ghost shark)
Length = 104
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 tgggcttccctttgtcatcctttgcct 43
||||||||||||||||||||| |||||
Sbjct: 22 tgggcttccctttgtcatcctatgcct 48
>RF00646;mir-204;AC187999.1/39408-39305 9031:Gallus gallus
(chicken)
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 6 catgtgacttgtgggcttccctttgtcatcctttgcct 43
|||||||| |||| ||||||||||||||||| |||||
Sbjct: 11 catgtgacccgtggacttccctttgtcatcctatgcct 48
