miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>28530_hsa-mir-212:mirbase
          Length = 110

 Score =  123 bits (62), Expect = 1e-29
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  accttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31 accttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggc 90

            
Query: 61 ca 62
          ||
Sbjct: 91 ca 92

>32803_rno-mir-212:mirbase
          Length = 111

 Score =  123 bits (62), Expect = 1e-29
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  accttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 accttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggc 91

            
Query: 61 ca 62
          ||
Sbjct: 92 ca 93

>33289_bta-mir-212:mirbase
          Length = 111

 Score =  123 bits (62), Expect = 1e-29
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  accttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 accttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggc 91

            
Query: 61 ca 62
          ||
Sbjct: 92 ca 93

>27096_eca-mir-212:mirbase
          Length = 60

 Score =  119 bits (60), Expect = 2e-28
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                      
Query: 2  ccttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggcc 61
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ccttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggcc 60

>27427_mdo-mir-212:mirbase
          Length = 91

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  accttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggc 60
          |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 16 accttggctctagactgcttactgcccgggccaccctcagtaacagtctccagtcacggc 75

            
Query: 61 ca 62
          ||
Sbjct: 76 ca 77

>27808_mml-mir-212:mirbase
          Length = 110

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  accttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggc 60
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 31 accttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcagggc 90

            
Query: 61 ca 62
          ||
Sbjct: 91 ca 92

>31939_mmu-mir-212:mirbase
          Length = 91

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  accttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggc 60
          ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 16 accttggctctagactgcttactgcccgggccgccttcagtaacagtctccagtcacggc 75

            
Query: 61 ca 62
          ||
Sbjct: 76 ca 77

>31940_mmu-mir-212:mirbase
          Length = 91

 Score =  115 bits (58), Expect = 3e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  accttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggc 60
          ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 16 accttggctctagactgcttactgcccgggccgccttcagtaacagtctccagtcacggc 75

            
Query: 61 ca 62
          ||
Sbjct: 76 ca 77

>34367_dre-mir-212:mirbase
          Length = 94

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  accttggctctagactgcttactgc 25
          |||||||||||||||||||||||||
Sbjct: 15 accttggctctagactgcttactgc 39

>34635_fru-mir-212:mirbase
          Length = 95

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  accttggctctagactgcttactgc 25
          |||||||||||||||||||||||||
Sbjct: 16 accttggctctagactgcttactgc 40

>34783_tni-mir-212:mirbase
          Length = 95

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  accttggctctagactgcttactgc 25
          |||||||||||||||||||||||||
Sbjct: 16 accttggctctagactgcttactgc 40

>25832_xtr-mir-212:mirbase
          Length = 96

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  accttggctctagactgcttactg 24
          ||||||||||||||||||||||||
Sbjct: 17 accttggctctagactgcttactg 40