miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00662;mir-132;ABRQ01002353.1/3673-3585 9813:Procavia capensis
          (cape rock hyrax)
          Length = 89

 Score =  123 bits (62), Expect = 3e-28
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  accttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 accttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggc 75

            
Query: 61 ca 62
          ||
Sbjct: 76 ca 77

>RF00662;mir-132;AAPE01105627.1/5025-4939 59463:Myotis lucifugus
          (little brown bat)
          Length = 87

 Score = 67.9 bits (34), Expect = 1e-11
 Identities = 55/61 (90%), Gaps = 2/61 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  accttggctctagactgcttactgcccgggccgccctcagtaacagtctccagtcacggc 60
          |||||||||  ||||||||||||||||||  |||||  ||||||||||||||||||||||
Sbjct: 16 accttggctgcagactgcttactgcccgg--cgccccgagtaacagtctccagtcacggc 73

           
Query: 61 c 61
          |
Sbjct: 74 c 74

>RF00662;mir-132;CAAK05007784.1/2841-2935 7955:Danio rerio
          (zebrafish)
          Length = 95

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  accttggctctagactgcttactgc 25
          |||||||||||||||||||||||||
Sbjct: 16 accttggctctagactgcttactgc 40

>RF00662;mir-132;ABPM01043889.1/132-226 106582:Maylandia zebra
          (zebra mbuna)
          Length = 95

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  accttggctctagactgcttactgc 25
          |||||||||||||||||||||||||
Sbjct: 16 accttggctctagactgcttactgc 40

>RF00662;mir-132;BAAF04037894.1/2420-2326 8090:Oryzias latipes
          (Japanese medaka)
          Length = 95

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  accttggctctagactgcttactgc 25
          |||||||||||||||||||||||||
Sbjct: 16 accttggctctagactgcttactgc 40

>RF00662;mir-132;AANH01000634.1/21971-22065 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 95

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  accttggctctagactgcttactgc 25
          ||||||||| |||||||||||||||
Sbjct: 16 accttggctttagactgcttactgc 40

>RF00662;mir-132;BAAF04066384.1/1751-1845 8090:Oryzias latipes
          (Japanese medaka)
          Length = 95

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  accttggctctagactgcttactgc 25
          ||||||||| |||||||||||||||
Sbjct: 16 accttggctttagactgcttactgc 40