miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00660;mir-214;AAWZ01045430.1/14604-14713 28377:Anolis
           carolinensis (green anole)
          Length = 110

 Score =  196 bits (99), Expect = 4e-50
 Identities = 105/107 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4   ctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63

                                                          
Query: 64  cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110




>RF00660;mir-214;AADN02033953.1/92-201 9031:Gallus gallus (chicken)
          Length = 110

 Score =  141 bits (71), Expect = 2e-33
 Identities = 98/107 (91%)
 Strand = Plus / Plus

                                                                       
Query: 4   ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
           |||||||  ||||||||||||||||||| ||||||||||||||||| || ||||||| ||
Sbjct: 4   ctggctgttcggagttgtcatgtgtctgtctgtctacacttgctgtccataacatccact 63

                                                          
Query: 64  cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
           |||||||||||| || |||||||||||||||| ||||||||||||||
Sbjct: 64  cacctgtacagcgggaacagacaggcagtcacctgacaacccagcct 110




>RF00660;mir-214;BAAF04061048.1/6848-6953 8090:Oryzias latipes
          (Japanese medaka)
          Length = 106

 Score = 95.6 bits (48), Expect = 1e-19
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                      
Query: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
          ||||||||||| |||||||||||||||||||| |||| |  |||||||||||||||||||
Sbjct: 21 tgtgtctgcctatctacacttgctgtgcagaatatcctccaacctgtacagcaggcacag 80

                  
Query: 84 acaggcag 91
          ||||||||
Sbjct: 81 acaggcag 88




>RF00660;mir-214;CT563248.9/82929-82824 7955:Danio rerio
          (zebrafish)
          Length = 106

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 62/66 (93%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
          ||||||||||||||||||||||||||||||| |||   ||||||||||||||||||||||
Sbjct: 23 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 81

                
Query: 86 aggcag 91
          ||||||
Sbjct: 82 aggcag 87




>RF00660;mir-214;CAAB01001079.1/28431-28538 31033:Takifugu
          rubripes
          Length = 108

 Score = 89.7 bits (45), Expect = 7e-18
 Identities = 63/68 (92%), Gaps = 2/68 (2%)
 Strand = Plus / Plus

                                                                      
Query: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
          ||||||||||||||||||||||||||||||| | || |||  ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 81

                  
Query: 84 acaggcag 91
          ||||||||
Sbjct: 82 acaggcag 89




>RF00660;mir-214;BAAE01167369.1/1925-1818 8090:Oryzias latipes
          (Japanese medaka)
          Length = 108

 Score = 89.7 bits (45), Expect = 7e-18
 Identities = 63/68 (92%), Gaps = 2/68 (2%)
 Strand = Plus / Plus

                                                                      
Query: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
          ||||||||||||||||||||||||||||||| | || |||  ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 81

                  
Query: 84 acaggcag 91
          ||||||||
Sbjct: 82 acaggcag 89




>RF00660;mir-214;CAAB01000803.1/19699-19808 31033:Takifugu
          rubripes
          Length = 110

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                      
Query: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
          ||||||||||| ||| |||||||||||||||| |||| |  |||||||||||||||||||
Sbjct: 24 tgtgtctgcctatctccacttgctgtgcagaatatcctccaacctgtacagcaggcacag 83

                  
Query: 84 acaggcag 91
          ||||||||
Sbjct: 84 acaggcag 91




>RF00660;mir-214;AANH01005434.1/26064-26173 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 110

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                      
Query: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
          ||||||||||| |||||||||||||||||||| | || |  |||||||||||||||||||
Sbjct: 24 tgtgtctgcctatctacacttgctgtgcagaataacctccaacctgtacagcaggcacag 83

                  
Query: 84 acaggcag 91
          ||||||||
Sbjct: 84 acaggcag 91