miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00130;mir-192;AAEX02008010.1/236844-236948 9615:Canis lupus
familiaris (dog)
Length = 105
Score = 157 bits (79), Expect = 2e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 tgtacaggaaaatgacctacgaattgatagacaatttggctaagtttgtctgtcattttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tgtacaggaaaatgacctacgaattgatagacaatttggctaagtttgtctgtcattttt 72
Query: 61 gtaggccaatattctgtat 79
|||||||||||||||||||
Sbjct: 73 gtaggccaatattctgtat 91
>RF00130;mir-192;AAGU02014260.1/2711-2609 9785:Loxodonta africana
(African savanna elephant)
Length = 103
Score = 109 bits (55), Expect = 5e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 1 tgtacaggaaaatgacctacgaattgatagacaatttggctaagtttgtctgtcattttt 60
||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||| |
Sbjct: 13 tgtacaggaaaatgacctatgaactgacagacaatatggctaagtttgtctgtcatttct 72
Query: 61 gtaggccaatattctgtat 79
||||||||| |||||||||
Sbjct: 73 gtaggccaacattctgtat 91
>RF00130;mir-192;AAIY01186786.1/2491-2595 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 105
Score = 103 bits (52), Expect = 3e-22
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 4 acaggaaaatgacctacgaattgatagacaatttggctaagtttgtctgtcatttttgta 63
|||||||||||||||| ||||||| ||||||| |||| ||| ||||||||||||| ||||
Sbjct: 16 acaggaaaatgacctatgaattgacagacaatatggccaagcttgtctgtcatttctgta 75
Query: 64 ggccaatattctgtat 79
||||||||||||||||
Sbjct: 76 ggccaatattctgtat 91
>RF00130;mir-192;AANN01206173.1/3045-3149 9365:Erinaceus europaeus
(western European hedgehog)
Length = 105
Score = 101 bits (51), Expect = 1e-21
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 1 tgtacaggaaaatgacctacgaattgatagacaatttggctaagtttgtctgtcattttt 60
||||||||||||||||||| ||||||| ||| ||| ||||| || ||||||||||||| |
Sbjct: 13 tgtacaggaaaatgacctatgaattgacagataatgtggctgagcttgtctgtcatttct 72
Query: 61 gtaggccaatattctgtat 79
|||||||||||||||||||
Sbjct: 73 gtaggccaatattctgtat 91
>RF00130;mir-192;ABRT010021146.1/1809-1713 9478:Tarsius syrichta
(Philippine tarsier)
Length = 97
Score = 99.6 bits (50), Expect = 5e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 10 aaatgacctacgaattgatagacaatttggctaagtttgtctgtcatttttgtaggccaa 69
|||||||||| ||||||| ||||||| |||||||||||||||||||||| | ||||||||
Sbjct: 14 aaatgacctatgaattgacagacaatatggctaagtttgtctgtcatttctataggccaa 73
Query: 70 tattctgtat 79
||||||||||
Sbjct: 74 tattctgtat 83
>RF00130;mir-192;AY866319.1/760-864 9544:Macaca mulatta (rhesus
monkey)
Length = 105
Score = 89.7 bits (45), Expect = 5e-18
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 3 tacaggaaaatgacctacgaattgatagacaatttggctaagtttgtctgtcatttttgt 62
||||||||||||||||| ||||||| ||||| | | ||| |||||||||||||||| | |
Sbjct: 15 tacaggaaaatgacctatgaattgacagacactatagctgagtttgtctgtcatttcttt 74
Query: 63 aggccaatattctgtat 79
|||||||||||||||||
Sbjct: 75 aggccaatattctgtat 91
>RF00130;mir-192;ABRN01401597.1/3154-3052 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 103
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/79 (89%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 1 tgtacaggaaaatgacctacgaattgatagacaatttggctaagtttgtctgtcattttt 60
||||||||||||||||||| ||||||| ||||| | ||| | ||||||||||||||| |
Sbjct: 13 tgtacaggaaaatgacctatgaattgacagacagtatggtt--gtttgtctgtcatttct 70
Query: 61 gtaggccaatattctgtat 79
|||||||||||||||||||
Sbjct: 71 gtaggccaatattctgtat 89
>RF00130;mir-192;ABRO01051746.1/2172-2068 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 105
Score = 85.7 bits (43), Expect = 7e-17
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 1 tgtacaggaaaatgacctacgaattgatagacaatttggctaagtttgtctgtcattttt 60
||||||||||||||||||| ||||||| |||| || ||||| | ||||||||||| || |
Sbjct: 13 tgtacaggaaaatgacctatgaattgacagacgatgtggctgaatttgtctgtcacttct 72
Query: 61 gtaggccaatattctgtat 79
||||||||||||||||||
Sbjct: 73 ataggccaatattctgtat 91
>RF00130;mir-192;AAPY01700927.1/1101-997 37347:Tupaia belangeri
(northern tree shrew)
Length = 105
Score = 81.8 bits (41), Expect = 1e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 3 tacaggaaaatgacctacgaattgatagacaatttggctaagtttgtctgtcatttttgt 62
||||||||||||||||| || |||| ||||||| |||||| | |||||||||||| ||
Sbjct: 15 tacaggaaaatgacctatgacttgacagacaatgtggctagttctgtctgtcatttccgt 74
Query: 63 aggccaatattctgtat 79
|||||||||||||||||
Sbjct: 75 aggccaatattctgtat 91
>RF00130;mir-192;AAGW01566423.1/1450-1554 9986:Oryctolagus
cuniculus (rabbit)
Length = 105
Score = 75.8 bits (38), Expect = 7e-14
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 6 aggaaaatgacctacgaattgatagacaatttggctaagtttgtctgtcatttttgtagg 65
|||||| ||||||| ||| ||| ||| || ||||||| |||||||||||||| ||||||
Sbjct: 18 aggaaattgacctatgaaatgacagatgatatggctaaatttgtctgtcatttctgtagg 77
Query: 66 ccaatattctgtat 79
||||||||||||||
Sbjct: 78 ccaatattctgtat 91
>RF00130;mir-192;AAHX01077280.1/19936-20038 10116:Rattus
norvegicus (Norway rat)
Length = 103
Score = 61.9 bits (31), Expect = 1e-09
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 tgtacaggaaaatgacctacgaattgatagacaatttggctaagtttgtctgtcattttt 60
||||||||| ||||||||| || |||| ||||| | ||||| || ||||||||| || |
Sbjct: 12 tgtacaggacaatgacctatgatttgacagacagtgtggctgcgtgtgtctgtca-ttct 70
Query: 61 gtaggccaatattctgtat 79
|||||||||||||||||||
Sbjct: 71 gtaggccaatattctgtat 89
>RF00130;mir-192;AAQR01465597.1/732-628 30611:Otolemur garnettii
(small-eared galago)
Length = 105
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 45 tttgtctgtcatttttgtaggccaatattctg 76
|||||||||||||| |||||||||||||||||
Sbjct: 57 tttgtctgtcatttctgtaggccaatattctg 88
>RF00130;mir-192;AAFR03023364.1/184964-184859 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 106
Score = 52.0 bits (26), Expect = 1e-06
Identities = 57/66 (86%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 6 aggaaaatgacctacgaattgatagacaatttggctaa-gtttgtctgtcatttttgtag 64
|||||||||||||| ||||||| ||||| | | ||| ||||||||||||||| |||||
Sbjct: 18 aggaaaatgacctatgaattgacagacattatatttaaagtttgtctgtcatttctgtag 77
Query: 65 gccaat 70
||||||
Sbjct: 78 gccaat 83
>RF00130;mir-192;AAPN01160419.1/4341-4444 9258:Ornithorhynchus
anatinus (platypus)
Length = 104
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 tgtacaggaaaatgacctacgaattgatagaca 33
||||||||||||||||||| ||||||| |||||
Sbjct: 13 tgtacaggaaaatgacctatgaattgacagaca 45
