miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34041_ssc-mir-216:mirbase
Length = 105
Score = 200 bits (101), Expect = 1e-52
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccccca 60
Query: 61 cagtggtctctgggattatgctaaacagagcaatatccttgccct 105
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatttccttgccct 105
>30909_ppy-mir-216:mirbase
Length = 110
Score = 192 bits (97), Expect = 4e-50
Identities = 103/105 (98%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccctca 60
Query: 61 cagtggtctctgggattatgctaaacagagcaatatccttgccct 105
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatttccttgccct 105
>27811_mml-mir-216a:mirbase
Length = 110
Score = 184 bits (93), Expect = 9e-48
Identities = 102/105 (97%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccctca 60
Query: 61 cagtggtctctgggattatgctaaacagagcaatatccttgccct 105
|||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 61 cagtggtctctgggattacgctaaacagagcaatttccttgccct 105
>28332_ggo-mir-216:mirbase
Length = 110
Score = 184 bits (93), Expect = 9e-48
Identities = 102/105 (97%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccctca 60
Query: 61 cagtggtctctgggattatgctaaacagagcaatatccttgccct 105
|||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatttcctagccct 105
>28533_hsa-mir-216a:mirbase
Length = 110
Score = 184 bits (93), Expect = 9e-48
Identities = 102/105 (97%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccctca 60
Query: 61 cagtggtctctgggattatgctaaacagagcaatatccttgccct 105
|||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatttcctagccct 105
>30119_ppa-mir-216:mirbase
Length = 110
Score = 184 bits (93), Expect = 9e-48
Identities = 102/105 (97%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccctca 60
Query: 61 cagtggtctctgggattatgctaaacagagcaatatccttgccct 105
|||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatttcctagccct 105
>31408_lca-mir-216:mirbase
Length = 110
Score = 184 bits (93), Expect = 9e-48
Identities = 102/105 (97%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccctca 60
Query: 61 cagtggtctctgggattatgctaaacagagcaatatccttgccct 105
|||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatttcctagccct 105
>33292_bta-mir-216a:mirbase
Length = 109
Score = 184 bits (93), Expect = 9e-48
Identities = 102/105 (97%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccccca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacagtcctcca 60
Query: 61 cagtggtctctgggattatgctaaacagagcaatatccttgccct 105
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatctccttgccct 105
>30291_ptr-mir-216a:mirbase
Length = 109
Score = 153 bits (77), Expect = 3e-38
Identities = 99/105 (94%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccccca 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 gatggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctca 59
Query: 61 cagtggtctctgggattatgctaaacagagcaatatccttgccct 105
|||||||||||||||||| |||||||||||||| |||| |||||
Sbjct: 60 cagtggtctctgggattaaactaaacagagcaatttcctagccct 104
>27430_mdo-mir-216:mirbase
Length = 97
Score = 147 bits (74), Expect = 2e-36
Identities = 89/94 (94%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccccca 60
||||||||||| |||||||||||||||||||||||||||||||||| ||| | |||| ||
Sbjct: 1 gatggctgtgaattggcttaatctcagctggcaactgtgagatgttaataaattccctca 60
Query: 61 cagtggtctctgggattatgctaaacagagcaat 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaat 94
>32806_rno-mir-216a:mirbase
Length = 106
Score = 113 bits (57), Expect = 3e-26
Identities = 84/93 (90%)
Strand = Plus / Plus
Query: 9 tgagttggcttaatctcagctggcaactgtgagatgttcatacaatcccccacagtggtc 68
|||||| | |||||||||||||||||||||||||||| | || || || ||||||||||
Sbjct: 9 tgagttagtttaatctcagctggcaactgtgagatgtccctatcattcctcacagtggtc 68
Query: 69 tctgggattatgctaaacagagcaatatccttg 101
|||||||||||||||||||||||||| ||||||
Sbjct: 69 tctgggattatgctaaacagagcaatttccttg 101
>25835_xtr-mir-216:mirbase
Length = 91
Score = 93.7 bits (47), Expect = 2e-20
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 3 tggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatcccccaca 62
||||||||| ||||||||||||||||||||||||||||| ||| ||| | | | ||||
Sbjct: 1 tggctgtgaattggcttaatctcagctggcaactgtgagcagttaataaattatctcaca 60
Query: 63 gtggtctctgggattatgctaaacagagcaa 93
||||||||||||||||| ||||||| |||||
Sbjct: 61 gtggtctctgggattatactaaacacagcaa 91
>31536_oan-mir-216:mirbase
Length = 123
Score = 91.7 bits (46), Expect = 1e-19
Identities = 82/94 (87%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccccca 60
||||||||||| | |||||||||||||||||||||||||||||| | | | || ||||
Sbjct: 12 gatggctgtgaatcggcttaatctcagctggcaactgtgagatgctaaccaattctccca 71
Query: 61 cagtggtctctgggattatgctaaacagagcaat 94
|||||| ||||||||||||||||||| ||||||
Sbjct: 72 cagtggcatctgggattatgctaaacacagcaat 105
>27099_eca-mir-216a:mirbase
Length = 58
Score = 87.7 bits (44), Expect = 1e-18
Identities = 58/60 (96%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 19 taatctcagctggcaactgtgagatgttcatacaatcccccacagtggtctctgggatta 78
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 1 taatctcagctggcaactgtgagatgttcata-aat-ccccacagtggtctctgggatta 58
>31943_mmu-mir-216a:mirbase
Length = 72
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 13 ttggcttaatctcagctggcaactgtgagatgttcatacaatcccccacagtggtctctg 72
|||| |||||||||||||||||||||||||||| | || || || ||||||||||||||
Sbjct: 1 ttggtttaatctcagctggcaactgtgagatgtccctatcattcctcacagtggtctctg 60
Query: 73 ggattatgctaa 84
||||||||||||
Sbjct: 61 ggattatgctaa 72
>26003_gga-mir-216:mirbase
Length = 106
Score = 85.7 bits (43), Expect = 6e-18
Identities = 83/94 (88%), Gaps = 3/94 (3%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccccca 60
||||||||||| ||||||||||||||||||||||||||||| ||| || ||| | ||
Sbjct: 1 gatggctgtgaattggcttaatctcagctggcaactgtgagcagttaat--aat-tctca 57
Query: 61 cagtggtctctgggattatgctaaacagagcaat 94
||||||| ||||||||||||||||||| ||||||
Sbjct: 58 cagtggtatctgggattatgctaaacacagcaat 91
>26511_tgu-mir-216a:mirbase
Length = 72
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 9 tgagttggcttaatctcagctggcaactgtgag 41
|||||||||||||||||||||||||||||||||
Sbjct: 1 tgagttggcttaatctcagctggcaactgtgag 33
>34369_dre-mir-216a-1:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 ttggcttaatctcagctggcaactgtgag 41
||||| |||||||||||||||||||||||
Sbjct: 9 ttggcataatctcagctggcaactgtgag 37
>34370_dre-mir-216a-2:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 ttggcttaatctcagctggcaactgtgag 41
||||| |||||||||||||||||||||||
Sbjct: 9 ttggcataatctcagctggcaactgtgag 37
>24696_bfl-mir-216:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 taatctcagctggcaactgtgag 41
|||||||||||||||||||||||
Sbjct: 9 taatctcagctggcaactgtgag 31
>25528_pma-mir-216a:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 aatctcagctggcaactgtgag 41
||||||||||||||||||||||
Sbjct: 13 aatctcagctggcaactgtgag 34
>34637_fru-mir-216a:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 aatctcagctggcaactgtgag 41
||||||||||||||||||||||
Sbjct: 8 aatctcagctggcaactgtgag 29
>34785_tni-mir-216a:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 aatctcagctggcaactgtgag 41
||||||||||||||||||||||
Sbjct: 8 aatctcagctggcaactgtgag 29
