miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00654;mir-216;AAGW01552079.1/8729-8641 9986:Oryctolagus
cuniculus (rabbit)
Length = 89
Score = 153 bits (77), Expect = 5e-37
Identities = 86/89 (96%)
Strand = Plus / Plus
Query: 4 ggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatcccccacag 63
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 1 ggctgtgagttggcttaatctcagctggcaactgtgagatattcatacaatccctcacag 60
Query: 64 tggtctctgggattatgctaaacagagca 92
||||||||||| |||||||||||||||||
Sbjct: 61 tggtctctggggttatgctaaacagagca 89
>RF00654;mir-216;AALT01617626.1/3023-3113 42254:Sorex araneus
(European shrew)
Length = 91
Score = 141 bits (71), Expect = 2e-33
Identities = 83/86 (96%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 9 tgagttggcttaatctcagctggcaactgtgagatgttcatacaat--cccccacagtgg 66
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6 tgagttggtttaatctcagctggcaactgtgagatgttcatacaattccccccacagtgg 65
Query: 67 tctctgggattatgctaaacagagca 92
||||||||||||||||||||||||||
Sbjct: 66 tctctgggattatgctaaacagagca 91
>RF00654;mir-216;AAHY01091760.1/5719-5631 10090:Mus musculus
(house mouse)
Length = 89
Score = 113 bits (57), Expect = 5e-25
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 4 ggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatcccccacag 63
|||| |||||||| |||||||||||||||||||||||||||| | || || || |||||
Sbjct: 1 ggctatgagttggtttaatctcagctggcaactgtgagatgtccttatcattcctcacag 60
Query: 64 tggtctctgggattatgctaaacagagca 92
|||||||||||||||||||||||||||||
Sbjct: 61 tggtctctgggattatgctaaacagagca 89
>RF00654;mir-216;ABRQ01364796.1/1315-1227 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 113 bits (57), Expect = 5e-25
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 4 ggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatcccccacag 63
|||||||||||||||||||||||||||||||||||||| ||| | | || |||| |||||
Sbjct: 1 ggctgtgagttggcttaatctcagctggcaactgtgagctgtccctccagtccctcacag 60
Query: 64 tggtctctgggattatgctaaacagagca 92
|||||||||||||| |||||||||||||
Sbjct: 61 tggtctctgggattcggctaaacagagca 89
>RF00654;mir-216;AAIY01552317.1/295-382 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 88
Score = 89.7 bits (45), Expect = 7e-18
Identities = 79/89 (88%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 4 ggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatcccccacag 63
||||||| | |||||||||||||||||||||||||||| ||||| | |||| || |||||
Sbjct: 1 ggctgtgggctggcttaatctcagctggcaactgtgagctgttcgtgcaat-cctcacag 59
Query: 64 tggtctctgggattatgctaaacagagca 92
||| |||||||| ||||||| ||||||||
Sbjct: 60 tggcctctgggactatgctacacagagca 88
>RF00654;mir-216;AAPN01112677.1/27856-27944 9258:Ornithorhynchus
anatinus (platypus)
Length = 89
Score = 81.8 bits (41), Expect = 2e-15
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 4 ggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatcccccacag 63
|||||||| | |||||||||||||||||||||||||||||| | | | || |||||||
Sbjct: 1 ggctgtgaatcggcttaatctcagctggcaactgtgagatgctaaccaattctcccacag 60
Query: 64 tggtctctgggattatgctaaacagagca 92
||| ||||||||||||||||||| ||||
Sbjct: 61 tggcatctgggattatgctaaacacagca 89
>RF00654;mir-216;AADN02046841.1/23280-23195 9031:Gallus gallus
(chicken)
Length = 86
Score = 75.8 bits (38), Expect = 1e-13
Identities = 78/89 (87%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 4 ggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatcccccacag 63
|||||||| ||||||||||||||||||||||||||||| ||| || ||| | |||||
Sbjct: 1 ggctgtgaattggcttaatctcagctggcaactgtgagcagttaat--aat-tctcacag 57
Query: 64 tggtctctgggattatgctaaacagagca 92
|||| ||||||||||||||||||| ||||
Sbjct: 58 tggtatctgggattatgctaaacacagca 86
>RF00654;mir-216;AAVX01063793.1/485-397 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 69.9 bits (35), Expect = 6e-12
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 14 tggcttaatctcagctggcaactgtgagatgttcatacaatcccccacagtggtctctgg 73
|||||||||||||||||||||||||||| || || |||||||||||||| ||||
Sbjct: 11 tggcttaatctcagctggcaactgtgagtgtttaatggtttcccccacagtggttgctgg 70
Query: 74 gattatgctaaacagagca 92
|||||||||||||| ||||
Sbjct: 71 gattatgctaaacacagca 89
>RF00654;mir-216;BX321898.29/72134-72045 7955:Danio rerio
(zebrafish)
Length = 90
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 ttggcttaatctcagctggcaactgtgag 41
||||| |||||||||||||||||||||||
Sbjct: 10 ttggcataatctcagctggcaactgtgag 38
>RF00654;mir-216;AANH01011241.1/47022-46939 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 ttaatctcagctggcaactgtgag 41
||||||||||||||||||||||||
Sbjct: 15 ttaatctcagctggcaactgtgag 38
>RF00654;mir-216;ABEP02005709.1/3618-3531 7739:Branchiostoma
floridae (Florida lancelet)
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 taatctcagctggcaactgtgag 41
|||||||||||||||||||||||
Sbjct: 16 taatctcagctggcaactgtgag 38
>RF00654;mir-216;BAAF04050285.1/305-216 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 aatctcagctggcaactgtgag 41
||||||||||||||||||||||
Sbjct: 17 aatctcagctggcaactgtgag 38
>RF00654;mir-216;BAAF04071571.1/4838-4755 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 aatctcagctggcaactgtgag 41
||||||||||||||||||||||
Sbjct: 17 aatctcagctggcaactgtgag 38
