miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00654;mir-216;AALT01617623.1/4047-4135 42254:Sorex araneus
(European shrew)
Length = 89
Score = 105 bits (53), Expect = 6e-23
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 aaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgtagagattc 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 16 aaatctctgcaggcaaatgtgatgtcactaaataattcacacacttacccgtagagattc 75
Query: 61 t 61
|
Sbjct: 76 t 76
>RF00654;mir-216;BX284627.4/32714-32802 10090:Mus musculus (house
mouse)
Length = 89
Score = 97.6 bits (49), Expect = 1e-20
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 1 aaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgtagagattc 60
||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||
Sbjct: 16 aaatctctgcaggcaaatgtgatgtcactgaagaaaccacacacttacctgtagagattc 75
Query: 61 t 61
|
Sbjct: 76 t 76
>RF00654;mir-216;ABRO01106143.1/1589-1501 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 97.6 bits (49), Expect = 1e-20
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 1 aaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgtagagattc 60
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 16 aaatctctgcaggcaaatgtgatgtcactgaagaaatcacacacttacccacagagattc 75
Query: 61 t 61
|
Sbjct: 76 t 76
>RF00654;mir-216;AAKN02040735.1/24209-24296 10141:Cavia porcellus
(domestic guinea pig)
Length = 88
Score = 83.8 bits (42), Expect = 2e-16
Identities = 58/62 (93%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 1 aaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgtagagattc 60
||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| ||||||
Sbjct: 16 aaatctctgcaggcaaatgtgatgtcactgaag-aatcacacacttacctgtaaagattc 74
Query: 61 tg 62
||
Sbjct: 75 tg 76
>RF00654;mir-216;ABRQ01364800.1/1509-1421 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 83.8 bits (42), Expect = 2e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 1 aaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgtagagat 58
||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct: 16 aaatctctgcaggcaaatgtgatgtcatgaaagaaaccacacacttacctgtagagat 73
>RF00654;mir-216;AAFR03002982.1/16332-16244 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 89
Score = 75.8 bits (38), Expect = 5e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 1 aaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgtagagattc 60
||||||||||||||||||||| |||| ||| || |||||||| ||||||||||||||||
Sbjct: 16 aaatctctgcaggcaaatgtggtgtcgctatagttatcacacaattacccgtagagattc 75
Query: 61 tg 62
||
Sbjct: 76 tg 77
>RF00654;mir-216;AADN02046841.1/28673-28585 9031:Gallus gallus
(chicken)
Length = 89
Score = 65.9 bits (33), Expect = 5e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 1 aaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgtagagattc 60
|||||||||||||||||||||||||| || || |||| |||| ||||| ||||||||||
Sbjct: 16 aaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctgtagagattc 75
Query: 61 t 61
|
Sbjct: 76 t 76
>RF00654;mir-216;AAIY01782907.1/856-768 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 89
Score = 60.0 bits (30), Expect = 3e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 1 aaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgtagagat 58
|||||||||||||||||||||| || || |||||||||||||| |||||||||||
Sbjct: 16 aaatctctgcaggcaaatgtgacgttgctgccgaaatcacacacttgcccgtagagat 73
>RF00654;mir-216;AAPN01112677.1/19396-19484 9258:Ornithorhynchus
anatinus (platypus)
Length = 89
Score = 52.0 bits (26), Expect = 8e-07
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 1 aaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgtagagattc 60
|||||||||| |||||||||| |||||| || |||| |||| ||||| ||||||||||
Sbjct: 16 aaatctctgctggcaaatgtggtgtcacggtagcaatcgcacaattacctgtagagattc 75
Query: 61 tg 62
||
Sbjct: 76 tg 77
>RF00654;mir-216;AAWZ01022334.1/1559-1470 28377:Anolis
carolinensis (green anole)
Length = 90
Score = 52.0 bits (26), Expect = 8e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 aaatctctgcaggcaaatgtgatgtc 26
||||||||||||||||||||||||||
Sbjct: 16 aaatctctgcaggcaaatgtgatgtc 41
>RF00654;mir-216;AACT01058314.1/9825-9745 51511:Ciona savignyi
Length = 81
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 aatctctgcaggcaaatgtgatgtca 27
||||||||||||||| ||||||||||
Sbjct: 17 aatctctgcaggcaactgtgatgtca 42
