miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00673;mir-217;AAEX02023028.1/182472-182367 9615:Canis lupus
familiaris (dog)
Length = 106
Score = 163 bits (82), Expect = 4e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 ttgatgtcgcagatactgcatcaggaactgattggataagaatgggtcaccatcagttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 ttgatgtcgcagatactgcatcaggaactgattggataagaatgggtcaccatcagttcc 78
Query: 61 taatgcattgccttcagcatct 82
||||||||||||||||||||||
Sbjct: 79 taatgcattgccttcagcatct 100
>RF00673;mir-217;AALT01617638.1/400-505 42254:Sorex araneus
(European shrew)
Length = 106
Score = 147 bits (74), Expect = 2e-35
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 1 ttgatgtcgcagatactgcatcaggaactgattggataagaatgggtcaccatcagttcc 60
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 19 ttgatgtcgtagatactgcatcaggaactgattggataaaaatgggtcaccatcagttcc 78
Query: 61 taatgcattgccttcagcatct 82
||||||||||||||||||||||
Sbjct: 79 taatgcattgccttcagcatct 100
>RF00673;mir-217;AAPY01560156.1/2469-2364 37347:Tupaia belangeri
(northern tree shrew)
Length = 106
Score = 147 bits (74), Expect = 2e-35
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 1 ttgatgtcgcagatactgcatcaggaactgattggataagaatgggtcaccatcagttcc 60
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 19 ttgatgtcgcggatactgcatcaggaactgattggataagaatcggtcaccatcagttcc 78
Query: 61 taatgcattgccttcagcatct 82
||||||||||||||||||||||
Sbjct: 79 taatgcattgccttcagcatct 100
>RF00673;mir-217;AAGW01552079.1/597-492 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 147 bits (74), Expect = 2e-35
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 1 ttgatgtcgcagatactgcatcaggaactgattggataagaatgggtcaccatcagttcc 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 19 ttgatgtcgcagatactgcatcaggaactgattggataagaatctgtcaccatcagttcc 78
Query: 61 taatgcattgccttcagcatct 82
||||||||||||||||||||||
Sbjct: 79 taatgcattgccttcagcatct 100
>RF00673;mir-217;AADN02046841.1/20616-20511 9031:Gallus gallus
(chicken)
Length = 106
Score = 139 bits (70), Expect = 6e-33
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 1 ttgatgtcgcagatactgcatcaggaactgattggataagaatgggtcaccatcagttcc 60
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 19 ttgatgtcgcagatactgcatcaggaactgattggataataatcagtcaccatcagttcc 78
Query: 61 taatgcattgccttcagcatct 82
||||||||||||||||||||||
Sbjct: 79 taatgcattgccttcagcatct 100
>RF00673;mir-217;AAQR01685763.1/646-752 30611:Otolemur garnettii
(small-eared galago)
Length = 107
Score = 125 bits (63), Expect = 9e-29
Identities = 79/83 (95%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 ttgatgtcgcagatactgcatcagg-aactgattggataagaatgggtcaccatcagttc 59
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 19 ttgatgtcgcagatactgcatcagggaactgattggataagaatcagtcaccatcagttc 78
Query: 60 ctaatgcattgccttcagcatct 82
|| ||||||||||||||||||||
Sbjct: 79 ctcatgcattgccttcagcatct 101
>RF00673;mir-217;AANN01395868.1/718-823 9365:Erinaceus europaeus
(western European hedgehog)
Length = 106
Score = 123 bits (62), Expect = 4e-28
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 1 ttgatgtcgcagatactgcatcaggaactgattggataagaatgggtcaccatcagttcc 60
||||||||| |||||||||||||||||||||||| ||||||||| | |||||||||||||
Sbjct: 19 ttgatgtcgtagatactgcatcaggaactgattgtataagaatgtgccaccatcagttcc 78
Query: 61 taatgcattgccttcagcatct 82
||||||||| ||||||||||||
Sbjct: 79 taatgcattaccttcagcatct 100
>RF00673;mir-217;AAIY01412982.1/1242-1137 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 106
Score = 107 bits (54), Expect = 2e-23
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 1 ttgatgtcgcagatactgcatcaggaactgattggataagaatgggtcaccatcagttcc 60
||||||| |||| ||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct: 19 ttgatgttgcaggtactgcatcaggaactgatcggataagtatctgtcaccatcagttcc 78
Query: 61 taatgcattgccttcagcatct 82
||||||| ||||||||||||||
Sbjct: 79 taatgcactgccttcagcatct 100
>RF00673;mir-217;AAWZ01022332.1/98697-98592 28377:Anolis
carolinensis (green anole)
Length = 106
Score = 99.6 bits (50), Expect = 5e-21
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 1 ttgatgtcgcagatactgcatcaggaactgattggataagaatgggtcaccatcagttcc 60
||||||||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct: 19 ttgatgtcgcagatactgcatcaggaactgattggggaataatcatgtaccatcagttcc 78
Query: 61 taatgcattgccttcagcatct 82
||||||||||||||||||||||
Sbjct: 79 taatgcattgccttcagcatct 100
>RF00673;mir-217;ABRQ01669115.1/1422-1321 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 83.8 bits (42), Expect = 3e-16
Identities = 73/82 (89%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 ttgatgtcgcagatactgcatcaggaactgattggataagaatgggtcaccatcagttcc 60
|||||||||||| |||||||||||||| ||| ||||||| || ||||||||||| | |
Sbjct: 16 ttgatgtcgcaggtactgcatcaggaaatgactggataaatatctgtcaccatcagct-c 74
Query: 61 taatgcattgccttcagcatct 82
||||||||||||||||||||||
Sbjct: 75 taatgcattgccttcagcatct 96
>RF00673;mir-217;AAGU02318163.1/3864-3759 9785:Loxodonta africana
(African savanna elephant)
Length = 106
Score = 60.0 bits (30), Expect = 4e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 9 gcagatactgcatcaggaactgattggataagaatgggtcaccatcagttcctaatgcat 68
|||| ||||||||||||||||||| || |||| || ||||| ||| ||||||||||
Sbjct: 27 gcaggtactgcatcaggaactgatcggttaagtatccgtcactgtcaattcctaatgcgc 86
Query: 69 tgccttcagcatct 82
||||||||||||||
Sbjct: 87 tgccttcagcatct 100
>RF00673;mir-217;BX321898.29/71915-71810 7955:Danio rerio
(zebrafish)
Length = 106
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 gatactgcatcaggaactgattggat 37
||||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattggat 55
>RF00673;mir-217;CAAB01000324.1/13656-13761 31033:Takifugu
rubripes
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 gatactgcatcaggaactgattgg 35
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>RF00673;mir-217;AANH01005109.1/22353-22248 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 gatactgcatcaggaactgattgg 35
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>RF00673;mir-217;BAAE01230814.1/1025-922 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 gatactgcatcaggaactgattgg 35
||||||||||||||||||||||||
Sbjct: 28 gatactgcatcaggaactgattgg 51
>RF00673;mir-217;ABEP02005709.1/2697-2622 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 tactgcatcaggaactgattggat 37
||||||||||||||||||||||||
Sbjct: 11 tactgcatcaggaactgattggat 34
