miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34046_ssc-mir-221:mirbase
Length = 70
Score = 123 bits (62), Expect = 1e-29
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 63
Query: 61 tt 62
||
Sbjct: 64 tt 65
>27106_eca-mir-221:mirbase
Length = 110
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 25 acctggcatacaatgtagatttctgtgtttcttgggcaacagctacattgtctgctgggt 84
Query: 61 tt 62
||
Sbjct: 85 tt 86
>31951_mmu-mir-221:mirbase
Length = 95
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 20 acctggcatacaatgtagatttctgtgtttgttaggcaacagctacattgtctgctgggt 79
Query: 61 tt 62
||
Sbjct: 80 tt 81
>32817_rno-mir-221:mirbase
Length = 109
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 25 acctggcatacaatgtagatttctgtgtttgttaggcaacagctacattgtctgctgggt 84
Query: 61 tt 62
||
Sbjct: 85 tt 86
>33301_bta-mir-221:mirbase
Length = 110
Score = 115 bits (58), Expect = 3e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 25 acctggcatacaatgtagatttctgtgtttgttgagcaacagctacattgtctgctgggt 84
Query: 61 tt 62
||
Sbjct: 85 tt 86
>26010_gga-mir-221:mirbase
Length = 99
Score = 107 bits (54), Expect = 8e-25
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 24 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 83
Query: 61 tt 62
||
Sbjct: 84 tt 85
>26517_tgu-mir-221:mirbase
Length = 73
Score = 107 bits (54), Expect = 8e-25
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 60
Query: 61 tt 62
||
Sbjct: 61 tt 62
>27819_mml-mir-221:mirbase
Length = 110
Score = 107 bits (54), Expect = 8e-25
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 25 acctggcatacaatgtagatttctgtgttcgttaggcaacagctacattgtctgctgggt 84
Query: 61 tt 62
||
Sbjct: 85 tt 86
>28336_ggo-mir-221:mirbase
Length = 110
Score = 107 bits (54), Expect = 8e-25
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 25 acctggcatacaatgtagatttctgtgttcgttaggcaacagctacattgtctgctgggt 84
Query: 61 tt 62
||
Sbjct: 85 tt 86
>28542_hsa-mir-221:mirbase
Length = 110
Score = 107 bits (54), Expect = 8e-25
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 25 acctggcatacaatgtagatttctgtgttcgttaggcaacagctacattgtctgctgggt 84
Query: 61 tt 62
||
Sbjct: 85 tt 86
>30123_ppa-mir-221:mirbase
Length = 110
Score = 107 bits (54), Expect = 8e-25
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 25 acctggcatacaatgtagatttctgtgttcgttaggcaacagctacattgtctgctgggt 84
Query: 61 tt 62
||
Sbjct: 85 tt 86
>30300_ptr-mir-221:mirbase
Length = 109
Score = 107 bits (54), Expect = 8e-25
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 25 acctggcatacaatgtagatttctgtgttcgttaggcaacagctacattgtctgctgggt 84
Query: 61 tt 62
||
Sbjct: 85 tt 86
>30916_ppy-mir-221:mirbase
Length = 110
Score = 107 bits (54), Expect = 8e-25
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 25 acctggcatacaatgtagatttctgtgttcgttaggcaacagctacattgtctgctgggt 84
Query: 61 tt 62
||
Sbjct: 85 tt 86
>31541_oan-mir-221:mirbase
Length = 93
Score = 91.7 bits (46), Expect = 5e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||
Sbjct: 19 acctggcatacaatgtagaattctgtatttgttaagcaacagctacattgtctgctgggt 78
Query: 61 tt 62
||
Sbjct: 79 tt 80
>27434_mdo-mir-221:mirbase
Length = 74
Score = 83.8 bits (42), Expect = 1e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
||||||||||||||||||| |||||||||| || | |||||||||||||||||||||||
Sbjct: 7 acctggcatacaatgtagaattctgtgtttattaagtaacagctacattgtctgctgggt 66
Query: 61 tt 62
||
Sbjct: 67 tt 68
>25840_xtr-mir-221:mirbase
Length = 93
Score = 67.9 bits (34), Expect = 7e-13
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 19 acctggcatacaatgtagaaaactgtgtttgcaaagcaacagctacattgtctgctgggt 78
Query: 61 tt 62
||
Sbjct: 79 tt 80
>34645_fru-mir-221:mirbase
Length = 77
Score = 58.0 bits (29), Expect = 7e-10
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgg--gcaacagctacattgtctgctgg 58
||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||
Sbjct: 6 acctggcatacaatgtagatttctgtg-tgcttggattctacagctacattgtctgctgg 64
Query: 59 gttt 62
||||
Sbjct: 65 gttt 68
>34793_tni-mir-221:mirbase
Length = 69
Score = 58.0 bits (29), Expect = 7e-10
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgg--gcaacagctacattgtctgctgg 58
||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||
Sbjct: 6 acctggcatacaatgtagatttctgtg-tgcttggattctacagctacattgtctgctgg 64
Query: 59 gttt 62
||||
Sbjct: 65 gttt 68
>34381_dre-mir-221:mirbase
Length = 93
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgt 28
||||||||||||||||||||||||||||
Sbjct: 8 acctggcatacaatgtagatttctgtgt 35
>25534_pma-mir-221:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 35 ggcaacagctacattgtctgctgggtt 61
|||||||||||||||||||||||||||
Sbjct: 45 ggcaacagctacattgtctgctgggtt 71
