miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00651;mir-221;AADN02010981.1/2588-2657 9031:Gallus gallus
(chicken)
Length = 70
Score = 107 bits (54), Expect = 1e-23
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6 acctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgctgggt 65
Query: 61 tt 62
||
Sbjct: 66 tt 67
>RF00651;mir-221;AAYZ01618848.1/488-419 9978:Ochotona princeps
(American pika)
Length = 70
Score = 99.6 bits (50), Expect = 4e-21
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 6 acctggcatacaatgtagatttctgtattttctgggcaacagctacattgtctgctgggt 65
Query: 61 tt 62
||
Sbjct: 66 tt 67
>RF00651;mir-221;AALT01657316.1/439-370 42254:Sorex araneus
(European shrew)
Length = 70
Score = 75.8 bits (38), Expect = 5e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
|||||||| ||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 6 acctggcacacaatgtagatttctgtatttatttaacaacagctacattgtctgctgggt 65
Query: 61 tt 62
||
Sbjct: 66 tt 67
>RF00651;mir-221;BAAE01085056.1/1241-1173 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 61.9 bits (31), Expect = 8e-10
Identities = 57/64 (89%), Gaps = 5/64 (7%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgttt--gttgggcaacagctacattgtctgctgg 58
|||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct: 6 acctggcatacaatgtagatttctgtgtttcaatt---ctacagctacattgtctgctgg 62
Query: 59 gttt 62
||||
Sbjct: 63 gttt 66
>RF00651;mir-221;BAAE01342535.1/103-172 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 52.0 bits (26), Expect = 8e-07
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 1 acctggcatacaatgtagatttctgtgtttgttgggcaacagctacattgtctgctgggt 60
|||||||||||| ||||| |||||||| || | | ||||||||||||||||||||||
Sbjct: 6 acctggcatacagtgtagtattctgtgtgcgtccgtctacagctacattgtctgctgggt 65
Query: 61 tt 62
||
Sbjct: 66 tt 67
>RF00651;mir-221;CU550700.7/20157-20229 7955:Danio rerio
(zebrafish)
Length = 73
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 acagctacattgtctgctgggttt 62
||||||||||||||||||||||||
Sbjct: 47 acagctacattgtctgctgggttt 70
