miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33302_bta-mir-222:mirbase
Length = 110
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 ccctcaatggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 ccctcaatggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctgg 80
Query: 61 ctactgggtctctgatggcatcttcta 87
|||||||||||||||||||||||||||
Sbjct: 81 ctactgggtctctgatggcatcttcta 107
>27107_eca-mir-222:mirbase
Length = 110
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 ccctcaatggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctgg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 21 ccctcaatggctcagtagccagtgtagatcctgtcttttgtaatcagcagctacatctgg 80
Query: 61 ctactgggtctctgatggcatcttctagct 90
||||||||||||||||||||||||||||||
Sbjct: 81 ctactgggtctctgatggcatcttctagct 110
>27521_age-mir-222:mirbase
Length = 110
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 ccctcaatggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctgg 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 ccctcagtggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctgg 80
Query: 61 ctactgggtctctgatggcatcttctagct 90
|||||||||||||||||||||||| |||||
Sbjct: 81 ctactgggtctctgatggcatcttttagct 110
>27820_mml-mir-222:mirbase
Length = 110
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 ccctcaatggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctgg 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 21 ccctcaatggctcagtagccagtgtagatcctgtctttcgtaatcagcagctacatctgg 80
Query: 61 ctactgggtctctgatggcatcttctagct 90
||||||||||||||||||||||||||||||
Sbjct: 81 ctactgggtctctgatggcatcttctagct 110
>28543_hsa-mir-222:mirbase
Length = 110
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 ccctcaatggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctgg 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 21 ccctcaatggctcagtagccagtgtagatcctgtctttcgtaatcagcagctacatctgg 80
Query: 61 ctactgggtctctgatggcatcttctagct 90
||||||||||||||||||||||||||||||
Sbjct: 81 ctactgggtctctgatggcatcttctagct 110
>30917_ppy-mir-222:mirbase
Length = 110
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 ccctcaatggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctgg 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 21 ccctcaatggctcagtagccagtgtagatcctgtctttcgtaatcagcagctacatctgg 80
Query: 61 ctactgggtctctgatggcatcttctagct 90
||||||||||||||||||||||||||||||
Sbjct: 81 ctactgggtctctgatggcatcttctagct 110
>32818_rno-mir-222:mirbase
Length = 103
Score = 147 bits (74), Expect = 2e-36
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 1 ccctcaatggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctgg 60
|||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 14 ccctcagtggctcagtagccagtgtagatcctgtctttggtaatcagcagctacatctgg 73
Query: 61 ctactgggtctctgatggcatcttctagct 90
|||||||||||||||||||||| |||||||
Sbjct: 74 ctactgggtctctgatggcatcatctagct 103
>34047_ssc-mir-222:mirbase
Length = 80
Score = 147 bits (74), Expect = 2e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 1 ccctcaatggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctgg 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3 ccctcaatggctcagtagccagtgtagatcctgtcatttgtaatcagtagctacatctgg 62
Query: 61 ctactgggtctctgatgg 78
||||||||||||||||||
Sbjct: 63 ctactgggtctctgatgg 80
>31952_mmu-mir-222:mirbase
Length = 79
Score = 125 bits (63), Expect = 6e-30
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 1 ccctcaatggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctgg 60
|||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1 ccctcagtggctcagtagccagtgtagatcctgtctttggtaatcagcagctacatctgg 60
Query: 61 ctactgggtctctgatggc 79
|||||||||||||| ||||
Sbjct: 61 ctactgggtctctggtggc 79
>31542_oan-mir-222a:mirbase
Length = 110
Score = 93.7 bits (47), Expect = 2e-20
Identities = 80/90 (88%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 ccctcaatggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctgg 60
|||||||| ||||||||| ||||||||||||||| || | |||||| ||||||||||||
Sbjct: 18 ccctcaatcgctcagtagtcagtgtagatcctgtattct--aatcagcagctacatctgg 75
Query: 61 ctactgggtctctgatggcatcttctagct 90
||||||||||||||| || | |||||||||
Sbjct: 76 ctactgggtctctgagggtaccttctagct 105
>26011_gga-mir-222-1:mirbase
Length = 98
Score = 87.7 bits (44), Expect = 1e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 tcaatggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctggcta 63
||||| ||||||||| |||||||||| |||||||| |||||| |||||||||||||||
Sbjct: 13 tcaatcgctcagtagtcagtgtagattctgtctttac-aatcagcagctacatctggcta 71
Query: 64 ctgggtctctgatggcatct 83
|||||||||||||| |||||
Sbjct: 72 ctgggtctctgatgacatct 91
>26012_gga-mir-222-2:mirbase
Length = 98
Score = 87.7 bits (44), Expect = 1e-18
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 tcaatggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctggcta 63
||||| ||||||||| |||||||||| |||||||| |||||| |||||||||||||||
Sbjct: 13 tcaatcgctcagtagtcagtgtagattctgtctttac-aatcagcagctacatctggcta 71
Query: 64 ctgggtctctgatggcatct 83
|||||||||||||| |||||
Sbjct: 72 ctgggtctctgatgacatct 91
>26518_tgu-mir-222-1:mirbase
Length = 74
Score = 81.8 bits (41), Expect = 8e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 10 gctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctggctactgggt 69
||||||||| |||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct: 3 gctcagtagtcagtgtagattctgtctttac-aatcagcagctacatctggctactgggt 61
Query: 70 ctctgatggcatc 82
|||||||| ||||
Sbjct: 62 ctctgatgacatc 74
>26519_tgu-mir-222-2:mirbase
Length = 74
Score = 81.8 bits (41), Expect = 8e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 10 gctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctggctactgggt 69
||||||||| |||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct: 3 gctcagtagtcagtgtagattctgtctttac-aatcagcagctacatctggctactgggt 61
Query: 70 ctctgatggcatc 82
|||||||| ||||
Sbjct: 62 ctctgatgacatc 74
>27435_mdo-mir-222a:mirbase
Length = 68
Score = 75.8 bits (38), Expect = 5e-15
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 43 atcagtagctacatctggctactgggtctctgatggcatctt 84
||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 21 atcagcagctacatctggctactgggtctctgatggcatctt 62
>34382_dre-mir-222:mirbase
Length = 108
Score = 75.8 bits (38), Expect = 5e-15
Identities = 68/77 (88%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 10 gctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctggctactgggt 69
||||||||| ||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct: 31 gctcagtagtcagtgtagatcctgtgtcac--aatcagcagctacatctggctactgggt 88
Query: 70 ctctgatggcatcttct 86
|||||||||||| ||||
Sbjct: 89 ctctgatggcattttct 105
>34646_fru-mir-222:mirbase
Length = 69
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 10 gctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctggctactgggt 69
||||||||| ||||||||||||||| | | |||||| |||||||||||||||||||||
Sbjct: 7 gctcagtaggcagtgtagatcctgtgta--gcaatcagcagctacatctggctactgggt 64
Query: 70 ctctg 74
|||||
Sbjct: 65 ctctg 69
>34794_tni-mir-222:mirbase
Length = 68
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 10 gctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctggctactgggt 69
||||||||| ||||||||||||||| | | |||||| |||||||||||||||||||||
Sbjct: 6 gctcagtaggcagtgtagatcctgtgta--gcaatcagcagctacatctggctactgggt 63
Query: 70 ctctg 74
|||||
Sbjct: 64 ctctg 68
>25841_xtr-mir-222:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 44 tcagtagctacatctggctactgggtctct 73
|||| |||||||||||||||||||||||||
Sbjct: 34 tcagcagctacatctggctactgggtctct 63
>25535_pma-mir-222:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 19 ccagtgtagatcctgtcttttgtaatcagtagctacatctggctactgggtctctg 74
||||||||||||||| || || | ||| |||||||| || ||||||||||||||
Sbjct: 26 ccagtgtagatcctgcctcgtgcacacagcagctacatttgactactgggtctctg 81
