miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00651;mir-221;ABRQ01115829.1/6664-6594 9813:Procavia capensis
(cape rock hyrax)
Length = 71
Score = 125 bits (63), Expect = 1e-28
Identities = 70/71 (98%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 5 caatggctcagtagccagtgtagatcctgtc-ttttgtaatcagtagctacatctggcta 63
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 caatggctcagtagccagtgtagatcctgtcattttgtaatcagtagctacatctggcta 60
Query: 64 ctgggtctctg 74
|||||||||||
Sbjct: 61 ctgggtctctg 71
>RF00651;mir-221;AADN02010980.1/16388-16456 9031:Gallus gallus
(chicken)
Length = 69
Score = 75.8 bits (38), Expect = 8e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 5 caatggctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctggctac 64
|||| ||||||||| |||||||||| |||||||| |||||| ||||||||||||||||
Sbjct: 1 caatcgctcagtagtcagtgtagattctgtctttac-aatcagcagctacatctggctac 59
Query: 65 tgggtctctg 74
||||||||||
Sbjct: 60 tgggtctctg 69
>RF00651;mir-221;AANH01009585.1/5625-5558 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 68
Score = 63.9 bits (32), Expect = 3e-10
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 10 gctcagtagccagtgtagatcctgtcttttgtaatcagtagctacatctggctactgggt 69
||||||||| ||||||||||||||| | | |||||| |||||||||||||||||||||
Sbjct: 6 gctcagtaggcagtgtagatcctgtgta--gcaatcagcagctacatctggctactgggt 63
Query: 70 ctc 72
|||
Sbjct: 64 ctc 66
>RF00651;mir-221;BAAF04018090.1/2115-2182 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 agctacatctggctactgggtctc 72
||||||||||||||||||||||||
Sbjct: 43 agctacatctggctactgggtctc 66
>RF00651;mir-221;CU550700.7/19683-19747 7955:Danio rerio
(zebrafish)
Length = 65
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 agctacatctggctactgggtctctg 74
||||||||| ||||||||||||||||
Sbjct: 40 agctacatccggctactgggtctctg 65
>RF00651;mir-221;AAVX01067207.1/2671-2602 7868:Callorhinchus milii
(ghost shark)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 agctacatctggctactgggtctctg 74
|||||||||||| |||||||||||||
Sbjct: 45 agctacatctggttactgggtctctg 70
