miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28337_ggo-mir-223:mirbase
Length = 110
Score = 180 bits (91), Expect = 1e-46
Identities = 100/103 (97%)
Strand = Plus / Plus
Query: 1 cctggcctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgt 60
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgt 60
Query: 61 ggaagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
>28544_hsa-mir-223:mirbase
Length = 110
Score = 180 bits (91), Expect = 1e-46
Identities = 100/103 (97%)
Strand = Plus / Plus
Query: 1 cctggcctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgt 60
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgt 60
Query: 61 ggaagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
>30124_ppa-mir-223:mirbase
Length = 110
Score = 180 bits (91), Expect = 1e-46
Identities = 100/103 (97%)
Strand = Plus / Plus
Query: 1 cctggcctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgt 60
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgt 60
Query: 61 ggaagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
>30301_ptr-mir-223:mirbase
Length = 110
Score = 180 bits (91), Expect = 1e-46
Identities = 100/103 (97%)
Strand = Plus / Plus
Query: 1 cctggcctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgt 60
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgt 60
Query: 61 ggaagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
>30918_ppy-mir-223:mirbase
Length = 110
Score = 180 bits (91), Expect = 1e-46
Identities = 100/103 (97%)
Strand = Plus / Plus
Query: 1 cctggcctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgt 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttagacactccgtgt 60
Query: 61 ggaagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
>27108_eca-mir-223:mirbase
Length = 104
Score = 172 bits (87), Expect = 3e-44
Identities = 96/99 (96%)
Strand = Plus / Plus
Query: 5 gcctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgtggaa 64
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 6 gcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtggta 65
Query: 65 gagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
|||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gagtgtcagtttgtcaaataccccaagtgcggcacatgc 104
>27628_sla-mir-223:mirbase
Length = 110
Score = 165 bits (83), Expect = 8e-42
Identities = 98/103 (95%)
Strand = Plus / Plus
Query: 1 cctggcctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgt 60
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||
Sbjct: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccgtgt 60
Query: 61 ggaagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
|| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 61 ggtagagtgtcagtttgtcaaataccccaagtgcgacacatgc 103
>27821_mml-mir-223:mirbase
Length = 110
Score = 159 bits (80), Expect = 5e-40
Identities = 95/100 (95%)
Strand = Plus / Plus
Query: 4 ggcctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgtgga 63
|||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct: 4 ggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccgtgtggt 63
Query: 64 agagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtgcggcatatgc 103
>27436_mdo-mir-223:mirbase
Length = 111
Score = 133 bits (67), Expect = 3e-32
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 8 tcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgtggaagag 67
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||
Sbjct: 12 tccttcagtgccacactccgtgtatttgacaagctgagttggacactccgtgtcgtagag 71
Query: 68 tgtcagtttgtcaaataccccaagtgcggca 98
|||||||||||||||||||||||||| ||||
Sbjct: 72 tgtcagtttgtcaaataccccaagtgaggca 102
>31953_mmu-mir-223:mirbase
Length = 110
Score = 123 bits (62), Expect = 3e-29
Identities = 86/94 (91%)
Strand = Plus / Plus
Query: 10 ctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgtggaagagtg 69
|||||||| ||| ||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 10 ctgcagtgtcacgctccgtgtatttgacaagctgagttggacactctgtgtggtagagtg 69
Query: 70 tcagtttgtcaaataccccaagtgcggcacatgc 103
|||||||||||||||||||||||| ||| |||||
Sbjct: 70 tcagtttgtcaaataccccaagtgtggctcatgc 103
>32819_rno-mir-223:mirbase
Length = 110
Score = 123 bits (62), Expect = 3e-29
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 2 ctggcctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgtg 61
||||||| |||||||| || ||||||||||||||||||||||||| ||||||| ||||
Sbjct: 2 ctggccttctgcagtgttacgctccgtgtatttgacaagctgagttggacactctgtgtg 61
Query: 62 gaagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
| |||||||||||||||||||||||||||||| ||| |||||
Sbjct: 62 gtagagtgtcagtttgtcaaataccccaagtgtggctcatgc 103
>33303_bta-mir-223:mirbase
Length = 108
Score = 119 bits (60), Expect = 4e-28
Identities = 90/99 (90%), Gaps = 2/99 (2%)
Strand = Plus / Plus
Query: 5 gcctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgtggaa 64
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
Sbjct: 5 gcctcctgcagtgccatgctccgtgtatttgacaagctgagttggacactccatgt--ag 62
Query: 65 gagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
|||||||||||||||||||||||||||| |||| ||||
Sbjct: 63 tagtgtcagtttgtcaaataccccaagtgtggcatatgc 101
>26013_gga-mir-223:mirbase
Length = 100
Score = 107 bits (54), Expect = 2e-24
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 10 ctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgtggaagagtg 69
||||||||| |||| |||||||||||||||||||||| ||||||| | ||| ||||||
Sbjct: 1 ctgcagtgcagcactgcgtgtatttgacaagctgagtttgacactcagtctggcagagtg 60
Query: 70 tcagtttgtcaaataccccaagtgcggcac 99
|||||||||||||||||||||||| |||||
Sbjct: 61 tcagtttgtcaaataccccaagtgaggcac 90
>31544_oan-mir-223:mirbase
Length = 124
Score = 95.6 bits (48), Expect = 6e-21
Identities = 79/88 (89%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 12 gcagtgccacactccgtgtatttgacaagctgagttagacactccatgtgg-aagagtgt 70
|||||||| | ||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 20 gcagtgccgcgctccgtgtatttgacaagctgagttggacactccgtgtggtttgagtgt 79
Query: 71 cagtttgtcaaataccccaagtgcggca 98
||||||||||||||||| ||||| ||||
Sbjct: 80 cagtttgtcaaataccctaagtgaggca 107
>25842_xtr-mir-223:mirbase
Length = 86
Score = 89.7 bits (45), Expect = 4e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 27 gtgtatttgacaagctgagttagacactccatgtggaagagtgtcagtttgtcaaatacc 86
|||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||||
Sbjct: 14 gtgtatttgacaagctgagtccgacactcaatgagacagagtgtcagtttgtcaaatacc 73
Query: 87 ccaagtgcggcac 99
||||||| |||||
Sbjct: 74 ccaagtgaggcac 86
>25669_xla-mir-223:mirbase
Length = 86
Score = 81.8 bits (41), Expect = 9e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 27 gtgtatttgacaagctgagttagacactccatgtggaagagtgtcagtttgtcaaatacc 86
|||||||||||||||||||| ||||||| || | |||||||||||||||||||||||
Sbjct: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
Query: 87 ccaagtgcggcac 99
||||||| |||||
Sbjct: 74 ccaagtgaggcac 86
>26520_tgu-mir-223:mirbase
Length = 71
Score = 79.8 bits (40), Expect = 4e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 27 gtgtatttgacaagctgagttagacactccatgtggaagagtgtcagtttgtcaaatacc 86
|||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||
Sbjct: 1 gtgtatttgacaagctgagtccgacactcagtgtgca-gagtgtcagtttgtcaaatacc 59
Query: 87 ccaagtgcggca 98
||||||| ||||
Sbjct: 60 ccaagtgaggca 71
>34795_tni-mir-223:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 8e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 27 gtgtatttgacaagctgagttagacactccatgtggaagagtgtcagtttgtcaaatacc 86
||||||||||||||||| ||| ||||||| | | ||||||||||||||||||||||
Sbjct: 16 gtgtatttgacaagctgtgtttgacactctgtatctgcgagtgtcagtttgtcaaatacc 75
Query: 87 ccaagtg 93
|||||||
Sbjct: 76 ccaagtg 82
>34647_fru-mir-223:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 65 gagtgtcagtttgtcaaataccccaagtg 93
|||||||||||||||||||||||||||||
Sbjct: 45 gagtgtcagtttgtcaaataccccaagtg 73
>34384_dre-mir-223:mirbase
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 67 gtgtcagtttgtcaaataccccaag 91
|||||||||||||||||||||||||
Sbjct: 70 gtgtcagtttgtcaaataccccaag 94
