miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00664;mir-223;AAKN02052886.1/11821-11930 10141:Cavia porcellus
(domestic guinea pig)
Length = 110
Score = 161 bits (81), Expect = 2e-39
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 11 tgcagtgccacactccgtgtatttgacaagctgagttagacactccatgtggaagagtgt 70
|||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 11 tgcagtaccacactccgtgtatttgacaagctgagttggacactccatgtggtagagtgt 70
Query: 71 cagtttgtcaaataccccaagtgcggcacatgc 103
|||||||||||||||||||||||||||||||||
Sbjct: 71 cagtttgtcaaataccccaagtgcggcacatgc 103
>RF00664;mir-223;AY866256.1/405-514 9544:Macaca mulatta (rhesus
monkey)
Length = 110
Score = 159 bits (80), Expect = 8e-39
Identities = 95/100 (95%)
Strand = Plus / Plus
Query: 4 ggcctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgtgga 63
|||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct: 4 ggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccgtgtggt 63
Query: 64 agagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtgcggcatatgc 103
>RF00664;mir-223;AANN01684196.1/3693-3802 9365:Erinaceus europaeus
(western European hedgehog)
Length = 110
Score = 147 bits (74), Expect = 3e-35
Identities = 92/98 (93%)
Strand = Plus / Plus
Query: 6 cctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgtggaag 65
|||| |||| || ||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 6 cctcttgcaatgtcacgctccgtgtatttgacaagctgagttagacactccatatggaag 65
Query: 66 agtgtcagtttgtcaaataccccaagtgcggcacatgc 103
||||||||||||||||||||||||||||||||| ||||
Sbjct: 66 agtgtcagtttgtcaaataccccaagtgcggcatatgc 103
>RF00664;mir-223;AAIY01539231.1/5018-5127 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 110
Score = 145 bits (73), Expect = 1e-34
Identities = 91/97 (93%)
Strand = Plus / Plus
Query: 7 ctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgtggaaga 66
||||||||||||||| |||||||||||||| || |||| ||||||||||||||||| |||
Sbjct: 7 ctcctgcagtgccacgctccgtgtatttgataaactgaattagacactccatgtggtaga 66
Query: 67 gtgtcagtttgtcaaataccccaagtgcggcacatgc 103
||||||||||||||||||||||||||||||| |||||
Sbjct: 67 gtgtcagtttgtcaaataccccaagtgcggctcatgc 103
>RF00664;mir-223;AAFR03059733.1/784-675 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 110
Score = 133 bits (67), Expect = 5e-31
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 8 tcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgtggaagag 67
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||
Sbjct: 8 tccttcagtgccacactccgtgtatttgacaagctgagttggacactccgtgtcgtagag 67
Query: 68 tgtcagtttgtcaaataccccaagtgcggca 98
|||||||||||||||||||||||||| ||||
Sbjct: 68 tgtcagtttgtcaaataccccaagtgaggca 98
>RF00664;mir-223;AALT01652710.1/2269-2378 42254:Sorex araneus
(European shrew)
Length = 110
Score = 131 bits (66), Expect = 2e-30
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 13 cagtgccacactccgtgtatttgacaagctgagttagacactccatgtggaagagtgtca 72
||||| ||||||||| |||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 13 cagtgtcacactccgcgtatttgacaagctgaattggacactccatgtggtagagtgtca 72
Query: 73 gtttgtcaaataccccaagtgcggca 98
||||||||||||||||||||||||||
Sbjct: 73 gtttgtcaaataccccaagtgcggca 98
>RF00664;mir-223;AL831708.9/47299-47408 10090:Mus musculus (house
mouse)
Length = 110
Score = 123 bits (62), Expect = 5e-28
Identities = 86/94 (91%)
Strand = Plus / Plus
Query: 10 ctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgtggaagagtg 69
|||||||| ||| ||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct: 10 ctgcagtgtcacgctccgtgtatttgacaagctgagttggacactctgtgtggtagagtg 69
Query: 70 tcagtttgtcaaataccccaagtgcggcacatgc 103
|||||||||||||||||||||||| ||| |||||
Sbjct: 70 tcagtttgtcaaataccccaagtgtggctcatgc 103
>RF00664;mir-223;AADN02013066.1/26830-26939 9031:Gallus gallus
(chicken)
Length = 110
Score = 107 bits (54), Expect = 3e-23
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 10 ctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgtggaagagtg 69
||||||||| |||| |||||||||||||||||||||| ||||||| | ||| ||||||
Sbjct: 10 ctgcagtgcagcactgcgtgtatttgacaagctgagtttgacactcagtctggcagagtg 69
Query: 70 tcagtttgtcaaataccccaagtgcggcac 99
|||||||||||||||||||||||| |||||
Sbjct: 70 tcagtttgtcaaataccccaagtgaggcac 99
>RF00664;mir-223;AAQR01675055.1/2409-2518 30611:Otolemur garnettii
(small-eared galago)
Length = 110
Score = 103 bits (52), Expect = 4e-22
Identities = 85/96 (88%)
Strand = Plus / Plus
Query: 3 tggcctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgtgg 62
||||||||||||||||||||||| |||||||||||| ||||||| |||||| | |
Sbjct: 3 tggcctcctgcagtgccacactctgtgtatttgacaggctgagtggaacactcagtttaa 62
Query: 63 aagagtgtcagtttgtcaaataccccaagtgcggca 98
|||||||||||||||||||||||||||||||||||
Sbjct: 63 tagagtgtcagtttgtcaaataccccaagtgcggca 98
>RF00664;mir-223;AAPN01125420.1/2697-2806 9258:Ornithorhynchus
anatinus (platypus)
Length = 110
Score = 95.6 bits (48), Expect = 1e-19
Identities = 79/88 (89%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 12 gcagtgccacactccgtgtatttgacaagctgagttagacactccatgtgg-aagagtgt 70
|||||||| | ||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 13 gcagtgccgcgctccgtgtatttgacaagctgagttggacactccgtgtggtttgagtgt 72
Query: 71 cagtttgtcaaataccccaagtgcggca 98
||||||||||||||||| ||||| ||||
Sbjct: 73 cagtttgtcaaataccctaagtgaggca 100
>RF00664;mir-223;ABRQ01452788.1/6932-7041 9813:Procavia capensis
(cape rock hyrax)
Length = 110
Score = 93.7 bits (47), Expect = 4e-19
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 1 cctggcctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgt 60
|||||||||||||||||| | || ||||||||||| |||||||||| |||||| |||||
Sbjct: 1 cctggcctcctgcagtgctatgctacgtgtatttgataagctgagttggacacttcatgt 60
Query: 61 ggaagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
| | |||||||||||||||||||| | |||| | ||||||||
Sbjct: 61 tgtacagtgtcagtttgtcaaatactctaagtacagcacatgc 103
>RF00664;mir-223;ABQF01018329.1/6784-6677 59729:Taeniopygia
guttata
Length = 108
Score = 85.7 bits (43), Expect = 1e-16
Identities = 71/79 (89%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 21 cactccgtgtatttgacaagctgagttagacactccatgtggaagagtgtcagtttgtca 80
|||| ||||||||||||||||||||| ||||||| |||| | ||||||||||||||||
Sbjct: 21 cactgcgtgtatttgacaagctgagtccgacactcagtgtgca-gagtgtcagtttgtca 79
Query: 81 aataccccaagtgcggcac 99
||||||||||||| |||||
Sbjct: 80 aataccccaagtgaggcac 98
>RF00664;mir-223;BAAF04035315.1/6268-6159 8090:Oryzias latipes
(Japanese medaka)
Length = 110
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 27 gtgtatttgacaagctgagttagacactccatgtggaagagtgtcagtttgtcaaatacc 86
||||||||||||||||||||| ||||||| || | ||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactctatctctgtgagtgtcagtttgtcaaatacc 86
Query: 87 ccaagtg 93
|||||||
Sbjct: 87 ccaagtg 93
>RF00664;mir-223;AANH01000582.1/391608-391499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 110
Score = 69.9 bits (35), Expect = 6e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 27 gtgtatttgacaagctgagttagacactccatgtggaagagtgtcagtttgtcaaatacc 86
||||||||||||||||||||| ||||||| | | ||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactctgtatctctgagtgtcagtttgtcaaatacc 86
Query: 87 ccaagtg 93
|||||||
Sbjct: 87 ccaagtg 93
>RF00664;mir-223;CAAB01000001.1/273051-272942 31033:Takifugu
rubripes
Length = 110
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 65 gagtgtcagtttgtcaaataccccaagtg 93
|||||||||||||||||||||||||||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;BX465863.11/57630-57739 7955:Danio rerio
(zebrafish)
Length = 110
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 67 gtgtcagtttgtcaaataccccaag 91
|||||||||||||||||||||||||
Sbjct: 67 gtgtcagtttgtcaaataccccaag 91
