miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q7M732|RTL1_MOUSE Retrotransposon-like protein 1 OS=Mus musculus
            GN=Rtl1 PE=2 SV=1
          Length = 1744

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -3

Query: 72   TEEPIMILLNTEDLASLNNDRLTV 1
            TEEPIMILLNTEDLASLNNDRLTV
Sbjct: 1202 TEEPIMILLNTEDLASLNNDRLTV 1225




>sp|A6NKG5|RTL1_HUMAN Retrotransposon-like protein 1 OS=Homo sapiens
            GN=RTL1 PE=2 SV=2
          Length = 1359

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -3

Query: 72   TEEPIMILLNTEDLASLNNDRLTV 1
            TEEPIMILLNTEDLASLNNDRLTV
Sbjct: 942  TEEPIMILLNTEDLASLNNDRLTV 965




>sp|Q52QI2|RTL1_BOVIN Retrotransposon-like protein 1 OS=Bos taurus
           GN=RTL1 PE=2 SV=2
          Length = 1331

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 23/24 (95%), Positives = 23/24 (95%)
 Frame = -3

Query: 72  TEEPIMILLNTEDLASLNNDRLTV 1
           TEEPIMILLN EDLASLNNDRLTV
Sbjct: 927 TEEPIMILLNKEDLASLNNDRLTV 950