miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;ABRO01253740.1/3377-3287 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 91
Score = 153 bits (77), Expect = 5e-37
Identities = 86/89 (96%)
Strand = Plus / Plus
Query: 3 gtgtgtgatgggttggcagtgtattgttagctggttgaatatatgaatggcatcagctaa 62
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3 gtgtgtgatgggttggcagtgtattgttagctggttgaatatgtgaatggcatcagctaa 62
Query: 63 catgcaactgctatcttattgcatataca 91
|||||| ||||||||| ||||||||||||
Sbjct: 63 catgcacctgctatctcattgcatataca 91
>RF00711;mir-449;AALT01534765.1/2819-2909 42254:Sorex araneus
(European shrew)
Length = 91
Score = 115 bits (58), Expect = 1e-25
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 5 gtgtgatgggttggcagtgtattgttagctggttgaatatatgaatggcatcagctaaca 64
|||||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||||
Sbjct: 5 gtgtgatgagttggcagtgtattgttagctggttggatatgtgaatagcatcagctaaca 64
Query: 65 tgcaactgctatcttattgcat 86
|||||||||| ||||||||||
Sbjct: 65 tgcaactgcttgcttattgcat 86
>RF00711;mir-449;ABRQ01364111.1/2302-2212 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 107 bits (54), Expect = 2e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 3 gtgtgtgatgggttggcagtgtattgttagctggttgaatatatgaatggcatcagctaa 62
|||||||||||||||||||||||||||||||||||||||| | | || ||||||||||
Sbjct: 3 gtgtgtgatgggttggcagtgtattgttagctggttgaattagtaagtgacatcagctaa 62
Query: 63 catgcaactgctatcttattgcatat 88
|||||| |||||| ||||||||||||
Sbjct: 63 catgcagctgctaacttattgcatat 88
>RF00711;mir-449;AAKN02031494.1/12810-12899 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 105 bits (53), Expect = 1e-22
Identities = 81/89 (91%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 3 gtgtgtgatgggttggcagtgtattgttagctggttgaatatatgaatggcatcagctaa 62
|||||||||||| ||||||||||||||||||||||||||||||| | | | |||||||
Sbjct: 3 gtgtgtgatgggctggcagtgtattgttagctggttgaatatat-attattagcagctaa 61
Query: 63 catgcaactgctatcttattgcatataca 91
||| |||||||||||||||||||||||||
Sbjct: 62 catacaactgctatcttattgcatataca 90
>RF00711;mir-449;AAGW01346249.1/4500-4410 9986:Oryctolagus
cuniculus (rabbit)
Length = 91
Score = 105 bits (53), Expect = 1e-22
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 3 gtgtgtgatgggttggcagtgtattgttagctggttgaatatatgaatggcatcagctaa 62
|||||||||| | ||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 3 gtgtgtgatgaggtggcagtgtattgttagctggttgaatatgtgtgtgatatcagctaa 62
Query: 63 catgcaactgctatcttattgcatataca 91
||| |||||||||||||||||||| ||||
Sbjct: 63 catacaactgctatcttattgcatttaca 91
>RF00711;mir-449;AAIY01660884.1/5468-5558 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 91
Score = 95.6 bits (48), Expect = 9e-20
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 6 tgtgatgggttggcagtgtattgttagctggttgaatatatgaatggcatcagctaacat 65
||||||| ||||||||||||||||||||||||||||||| ||| | ||| |||||||| |
Sbjct: 6 tgtgatgagttggcagtgtattgttagctggttgaatatgtgagtagcaccagctaacgt 65
Query: 66 gcaactgctatcttattgca 85
||| |||||| |||||||||
Sbjct: 66 gcagctgctaacttattgca 85
>RF00711;mir-449;CAAA01026551.1/5646-5736 10090:Mus musculus
(house mouse)
Length = 91
Score = 93.7 bits (47), Expect = 4e-19
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 3 gtgtgtgatgggttggcagtgtattgttagctggttgaatatatgaatggcatcagctaa 62
||||||||||| |||||||||||||||||||||||||| ||| ||| |||| |||||||
Sbjct: 3 gtgtgtgatggcttggcagtgtattgttagctggttgagtatgtgagcggcaccagctaa 62
Query: 63 catgcaactgctatcttattgca 85
||||| |||||| || |||||||
Sbjct: 63 catgcgactgctctcctattgca 85
>RF00711;mir-449;ABQO010597990.1/363-452 9315:Macropus eugenii
(tammar wallaby)
Length = 90
Score = 81.8 bits (41), Expect = 1e-15
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 6 tgtgatgggttggcagtgtattgttagctggttgaatatatgaatggcatcagctaacat 65
||||||||| ||||||||||||||||||||||||||||| ||||| | | |||||| ||
Sbjct: 6 tgtgatgggatggcagtgtattgttagctggttgaatatctgaat-gtaccagctactat 64
Query: 66 gcaactgctatcttattgcat 86
||||||||| || ||||||||
Sbjct: 65 gcaactgctgtcctattgcat 85
>RF00711;mir-449;AAFR03035385.1/18957-18868 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 73/82 (89%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 6 tgtgatgggttggcagtgtattgttagctggttgaatatatgaatg-gcatcagctaaca 64
||||||||| ||||||||||||||||||||||||| ||| |||| | || |||||||||
Sbjct: 6 tgtgatgggatggcagtgtattgttagctggttgactatctgaacgtgc--cagctaaca 63
Query: 65 tgcaactgctatcttattgcat 86
||||||||||||| |||||||
Sbjct: 64 tgcaactgctatcccattgcat 85
>RF00711;mir-449;AAPN01209390.1/1892-1981 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 56.0 bits (28), Expect = 8e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 15 ttggcagtgtattgttagctggttgaatatatgaatggcatcagctaacatgcaactgct 74
|||||||||| ||||||||||||||||||| | ||||||| ||||| ||| || |||||
Sbjct: 15 ttggcagtgt-ttgttagctggttgaatatttaaatggcaccagctgacagacagctgct 73
Query: 75 atcttattgcat 86
|| ||||||||
Sbjct: 74 ttcctattgcat 85
>RF00711;mir-449;AAWZ01022030.1/3210-3300 28377:Anolis
carolinensis (green anole)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 3 gtgtgtgatgggttggcagtgtattgttagctgg 36
||||||| ||| |||||||||||||||||||||
Sbjct: 3 gtgtgtggtggaatggcagtgtattgttagctgg 36
