miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00708;mir-450;AAGU02249219.1/617-526 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 83.8 bits (42), Expect = 2e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 1 ttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcatccat 58
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 18 ttttgcaatatgttcctgaatatgtaagccaagtgtattgggagcattttgcatccat 75
>RF00708;mir-450;AAKN02053360.1/153106-153014 10141:Cavia
porcellus (domestic guinea pig)
Length = 93
Score = 73.8 bits (37), Expect = 2e-13
Identities = 56/60 (93%), Gaps = 3/60 (5%)
Strand = Plus / Plus
Query: 1 ttttgcaatatgttcctgaatatgtaatata--agtgtattgggaacattttgcatccat 58
||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct: 18 ttttgcaatatgttcctga-tatgtaatatataagtatattgggaacattttgcatccat 76
>RF00708;mir-450;ABRQ01123746.1/594-504 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 69.9 bits (35), Expect = 3e-12
Identities = 51/55 (92%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 1 ttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcatc 55
|||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||
Sbjct: 18 ttttgcgatatgttcct-aatatgttatataagtatattgggaacattttgcatc 71
>RF00708;mir-450;AACN010723377.1/367-457 9615:Canis lupus
familiaris (dog)
Length = 91
Score = 67.9 bits (34), Expect = 1e-11
Identities = 50/54 (92%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 1 ttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcat 54
|||||| || ||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 18 ttttgcgatgtgttcct-aatatgtactataagtgtattgggaacattttgcat 70
>RF00708;mir-450;CAAA01222947.1/3522-3431 10090:Mus musculus
(house mouse)
Length = 92
Score = 67.9 bits (34), Expect = 1e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 1 ttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcat 54
||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct: 18 ttttgcagtatgttcctgaatacataacataagcgtattgggaacattttgcat 71
>RF00708;mir-450;AAGV020284255.1/3919-3829 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 91
Score = 63.9 bits (32), Expect = 2e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 19 aatatgtaatataagtgtattgggaacattttgcatccat 58
|||||| ||||||||||||||||||| |||||||||||||
Sbjct: 35 aatatgaaatataagtgtattgggaatattttgcatccat 74
>RF00708;mir-450;AANU01115741.1/25269-25359 9544:Macaca mulatta
(rhesus monkey)
Length = 91
Score = 52.0 bits (26), Expect = 7e-07
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 1 ttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcat 54
|||||| || ||||||| |||||||| ||||| | |||||||||||||||||||
Sbjct: 18 ttttgcgatgtgttcct-aatatgtactataaatatattgggaacattttgcat 70
>RF00708;mir-450;AAQQ01708411.1/190-100 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 91
Score = 52.0 bits (26), Expect = 7e-07
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 1 ttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcat 54
|||||| || ||||||| ||||||||||| | |||||||||||||||||||||
Sbjct: 18 ttttgcgatgtgttcct-aatatgtaataagaatgtattgggaacattttgcat 70
>RF00708;mir-450;AAYZ01306302.1/1275-1185 9978:Ochotona princeps
(American pika)
Length = 91
Score = 52.0 bits (26), Expect = 7e-07
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 1 ttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcat 54
|||||| |||||||||| |||||| | ||||| | |||||||||||||||||||
Sbjct: 18 ttttgcgatatgttcct-aatatgcactataactatattgggaacattttgcat 70
>RF00708;mir-450;ABRQ01123746.1/258-164 9813:Procavia capensis
(cape rock hyrax)
Length = 95
Score = 46.1 bits (23), Expect = 4e-05
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 4 tgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcatccat 58
||||| |||||||||| || ||| |||||||||||||| ||| ||||||||||
Sbjct: 21 tgcaagatgttcctgactacataaggtaagtgtattgggagcatattgcatccat 75
>RF00708;mir-450;CAAA01222947.1/3684-3594 10090:Mus musculus
(house mouse)
Length = 91
Score = 44.1 bits (22), Expect = 2e-04
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 1 ttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattttgcat 54
|||||| || ||||||| ||||||| ||||| | |||||||||||||||||||
Sbjct: 18 ttttgcgatgtgttcct-aatatgtgctataattatattgggaacattttgcat 70
>RF00708;mir-450;AAIY01247667.1/662-753 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 92
Score = 42.1 bits (21), Expect = 7e-04
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 1 ttttgcaatatgttcctgaatatgtaatataagtgtattgggaacattt 49
||||| ||||||||| ||| ||||||| |||| || ||||||||||||
Sbjct: 18 ttttgtaatatgttcttgagtatgtaacataaatgccttgggaacattt 66
