miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AB016889.1/45011-45196 3702:Arabidopsis thaliana
(thale cress)
Length = 186
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 44 atgtttagtagccaaggatgacttgcct 71
||||||||||||||||||||||||||||
Sbjct: 175 atgtttagtagccaaggatgacttgcct 148
>RF00865;MIR169_5;AB016889.1/38805-38989 3702:Arabidopsis thaliana
(thale cress)
Length = 185
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 44 atgtttagtagccaaggatgacttgcct 71
||||||||||||||||||||||||||||
Sbjct: 174 atgtttagtagccaaggatgacttgcct 147
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 117 aggcagtctccttggctatctt 138
||||||||||||||||||||||
Sbjct: 38 aggcagtctccttggctatctt 17
>RF00645;MIR169_2;AY551201.1/49-220 3702:Arabidopsis thaliana
(thale cress)
Length = 172
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 atgtttagtagccaaggatgacttgcct 71
||||||||||||||||||||||||||||
Sbjct: 5 atgtttagtagccaaggatgacttgcct 32
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 aggcagtctccttggctatctt 138
||||||||||||||||||||||
Sbjct: 141 aggcagtctccttggctatctt 162
>RF00645;MIR169_2;AB016889.1/45191-45017 3702:Arabidopsis thaliana
(thale cress)
Length = 175
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 atgtttagtagccaaggatgacttgcct 71
||||||||||||||||||||||||||||
Sbjct: 7 atgtttagtagccaaggatgacttgcct 34
>RF00865;MIR169_5;ABIM01001939.1/16104-16248 3649:Carica papaya
(papaya)
Length = 145
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 45 tgtttagtagccaaggatgacttgccta 72
||||| ||||||||||||||||||||||
Sbjct: 131 tgtttggtagccaaggatgacttgccta 104
>RF00865;MIR169_5;AY551203.1/210-25 3702:Arabidopsis thaliana (thale
cress)
Length = 186
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 44 atgtttagtagccaaggatgacttgcct 71
||||||| ||||||||||||||||||||
Sbjct: 175 atgtttaatagccaaggatgacttgcct 148
>RF00865;MIR169_5;AARH01000472.1/145584-145453 3694:Populus
trichocarpa
Length = 132
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 45 tgtttagtagccaaggatgacttgcctactct 76
||||| |||||||||||||||||||| |||||
Sbjct: 120 tgtttggtagccaaggatgacttgcccactct 89
>RF00645;MIR169_2;ABIM01001939.1/16240-16110 3649:Carica papaya
(papaya)
Length = 131
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 tgtttagtagccaaggatgacttgccta 72
||||| ||||||||||||||||||||||
Sbjct: 7 tgtttggtagccaaggatgacttgccta 34
>RF00645;MIR169_2;AY551203.1/30-206 3702:Arabidopsis thaliana
(thale cress)
Length = 177
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 44 atgtttagtagccaaggatgacttgcct 71
||||||| ||||||||||||||||||||
Sbjct: 7 atgtttaatagccaaggatgacttgcct 34
>RF00645;MIR169_2;AARH01000472.1/145460-145578 3694:Populus
trichocarpa
Length = 119
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 tgtttagtagccaaggatgacttgcctactct 76
||||| |||||||||||||||||||| |||||
Sbjct: 6 tgtttggtagccaaggatgacttgcccactct 37
>RF00865;MIR169_5;ABIM01022203.1/1875-2012 3649:Carica papaya
(papaya)
Length = 138
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 45 tgtttagtagccaaggatgacttgcct 71
||||| |||||||||||||||||||||
Sbjct: 123 tgtttggtagccaaggatgacttgcct 97
>RF00865;MIR169_5;AARH01000583.1/30070-29928 3694:Populus
trichocarpa
Length = 143
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 45 tgtttagtagccaaggatgacttgcct 71
||||| |||||||||||||||||||||
Sbjct: 131 tgtttggtagccaaggatgacttgcct 105
>RF00865;MIR169_5;AARH01003823.1/108214-108346 3694:Populus
trichocarpa
Length = 133
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 45 tgtttagtagccaaggatgacttgcctactc 75
||||| |||||||||||||||||||| ||||
Sbjct: 121 tgtttggtagccaaggatgacttgcccactc 91
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 46 gtttagtagccaaggatgacttgccta 72
|||| ||||||||||||||||||||||
Sbjct: 127 gtttggtagccaaggatgacttgccta 101
>RF00865;MIR169_5;AC216452.1/111365-111227 3694:Populus trichocarpa
Length = 139
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 45 tgtttagtagccaaggatgacttgcct 71
||||| |||||||||||||||||||||
Sbjct: 127 tgtttggtagccaaggatgacttgcct 101
>RF00865;MIR169_5;ABXC01004203.1/1754-1629 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 51 gtagccaaggatgacttgcctac 73
|||||||||||||||||||||||
Sbjct: 107 gtagccaaggatgacttgcctac 85
>RF00865;MIR169_5;ABXC01002768.1/23520-23657 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 50 agtagccaaggatgacttgccta 72
|||||||||||||||||||||||
Sbjct: 118 agtagccaaggatgacttgccta 96
>RF00865;MIR169_5;ABXC01004204.1/1140-1015 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 51 gtagccaaggatgacttgcctac 73
|||||||||||||||||||||||
Sbjct: 107 gtagccaaggatgacttgcctac 85
>RF00645;MIR169_2;ABIM01022203.1/2003-1881 3649:Carica papaya
(papaya)
Length = 123
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tgtttagtagccaaggatgacttgcct 71
||||| |||||||||||||||||||||
Sbjct: 7 tgtttggtagccaaggatgacttgcct 33
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 gtttagtagccaaggatgacttgccta 72
|||| ||||||||||||||||||||||
Sbjct: 10 gtttggtagccaaggatgacttgccta 36
>RF00645;MIR169_2;AARH01003823.1/108339-108220 3694:Populus
trichocarpa
Length = 120
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 45 tgtttagtagccaaggatgacttgcctactc 75
||||| |||||||||||||||||||| ||||
Sbjct: 6 tgtttggtagccaaggatgacttgcccactc 36
>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus
trichocarpa
Length = 210
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tgtttagtagccaaggatgacttgcct 71
||||| |||||||||||||||||||||
Sbjct: 6 tgtttggtagccaaggatgacttgcct 32
>RF00645;MIR169_2;AC216452.1/111234-111359 3694:Populus
trichocarpa
Length = 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tgtttagtagccaaggatgacttgcct 71
||||| |||||||||||||||||||||
Sbjct: 6 tgtttggtagccaaggatgacttgcct 32
>RF00645;MIR169_2;AARH01000583.1/29935-30064 3694:Populus
trichocarpa
Length = 130
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tgtttagtagccaaggatgacttgcct 71
||||| |||||||||||||||||||||
Sbjct: 6 tgtttggtagccaaggatgacttgcct 32
>RF00645;MIR169_2;ABXC01004203.1/1636-1748 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 gtagccaaggatgacttgcctac 73
|||||||||||||||||||||||
Sbjct: 13 gtagccaaggatgacttgcctac 35
>RF00645;MIR169_2;ABXC01004204.1/1022-1134 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 gtagccaaggatgacttgcctac 73
|||||||||||||||||||||||
Sbjct: 13 gtagccaaggatgacttgcctac 35
>RF00645;MIR169_2;ABXC01002768.1/23650-23526 4558:Sorghum bicolor
(sorghum)
Length = 125
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 agtagccaaggatgacttgccta 72
|||||||||||||||||||||||
Sbjct: 14 agtagccaaggatgacttgccta 36
>RF00865;MIR169_5;AY551202.1/194-30 3702:Arabidopsis thaliana (thale
cress)
Length = 165
Score = 44.1 bits (22), Expect = 7e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 117 aggcagtctccttggctatcttaataggctcttctttc 154
|||||||||||||||||||| | ||| | |||||||||
Sbjct: 38 aggcagtctccttggctatccttatatgttcttctttc 1
>RF00865;MIR169_5;AASG02002697.1/24175-24333 3988:Ricinus communis
(castor bean)
Length = 159
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 gtttagtagccaaggatgacttgcct 71
|||| |||||||||||||||||||||
Sbjct: 145 gtttggtagccaaggatgacttgcct 120
>RF00865;MIR169_5;AASG02003632.1/10304-10430 3988:Ricinus communis
(castor bean)
Length = 127
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 45 tgtttagtagccaaggatgacttgcc 70
||||| ||||||||||||||||||||
Sbjct: 115 tgtttggtagccaaggatgacttgcc 90
>RF00865;MIR169_5;AASG02001447.1/39455-39304 3988:Ricinus communis
(castor bean)
Length = 152
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 gtttagtagccaaggatgacttgcct 71
|||| |||||||||||||||||||||
Sbjct: 138 gtttggtagccaaggatgacttgcct 113
>RF00865;MIR169_5;CAAP02000122.1/24661-24522 29760:Vitis vinifera
Length = 140
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 51 gtagccaaggatgacttgccta 72
||||||||||||||||||||||
Sbjct: 122 gtagccaaggatgacttgccta 101
>RF00865;MIR169_5;ABXC01005012.1/10458-10330 4558:Sorghum bicolor
(sorghum)
Length = 129
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 51 gtagccaaggatgacttgccta 72
||||||||||||||||||||||
Sbjct: 108 gtagccaaggatgacttgccta 87
>RF00865;MIR169_5;ABXC01005012.1/7179-7306 4558:Sorghum bicolor
(sorghum)
Length = 128
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 51 gtagccaaggatgacttgccta 72
||||||||||||||||||||||
Sbjct: 110 gtagccaaggatgacttgccta 89
>RF00865;MIR169_5;AP008208.1/18658095-18658282 39947:Oryza sativa
Japonica Group
Length = 188
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 51 gtagccaaggatgacttgccta 72
||||||||||||||||||||||
Sbjct: 171 gtagccaaggatgacttgccta 150
>RF00865;MIR169_5;AACV01009625.1/5578-5722 39947:Oryza sativa
Japonica Group
Length = 145
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 51 gtagccaaggatgacttgccta 72
||||||||||||||||||||||
Sbjct: 126 gtagccaaggatgacttgccta 105
>RF00645;MIR169_2;AASG02001447.1/39312-39449 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 46 gtttagtagccaaggatgacttgcct 71
|||| |||||||||||||||||||||
Sbjct: 7 gtttggtagccaaggatgacttgcct 32
>RF00645;MIR169_2;AASG02002697.1/24326-24181 3988:Ricinus communis
(castor bean)
Length = 146
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 46 gtttagtagccaaggatgacttgcct 71
|||| |||||||||||||||||||||
Sbjct: 8 gtttggtagccaaggatgacttgcct 33
>RF00645;MIR169_2;CAAP02000122.1/24529-24655 29760:Vitis vinifera
Length = 127
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 gtagccaaggatgacttgccta 72
||||||||||||||||||||||
Sbjct: 12 gtagccaaggatgacttgccta 33
>RF00645;MIR169_2;ABXC01005012.1/7295-7185 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 gtagccaaggatgacttgccta 72
||||||||||||||||||||||
Sbjct: 8 gtagccaaggatgacttgccta 29
>RF00645;MIR169_2;ABXC01005012.1/10344-10452 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 gtagccaaggatgacttgccta 72
||||||||||||||||||||||
Sbjct: 8 gtagccaaggatgacttgccta 29
>RF00645;MIR169_2;AP008210.1/19428619-19428750 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 gtagccaaggatgacttgccta 72
||||||||||||||||||||||
Sbjct: 13 gtagccaaggatgacttgccta 34
>RF00645;MIR169_2;AP004062.3/84631-84457 39947:Oryza sativa
Japonica Group
Length = 175
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 gtagccaaggatgacttgccta 72
||||||||||||||||||||||
Sbjct: 11 gtagccaaggatgacttgccta 32
