miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00722;mir-451;AAKN02033337.1/59671-59742 10141:Cavia porcellus
(domestic guinea pig)
Length = 72
Score = 109 bits (55), Expect = 4e-24
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 1 ttggggatggcgaggaaaccgttaccattactgagtttagtaatggtaatggttctcttg 60
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 2 ttggggatggcgaggaaaccgttaccattactgagtttagtaatggtgacggttctcttg 61
Query: 61 ctg 63
|||
Sbjct: 62 ctg 64
>RF00722;mir-451;AAPN01323131.1/127-56 9258:Ornithorhynchus
anatinus (platypus)
Length = 72
Score = 95.6 bits (48), Expect = 7e-20
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 8 tggcgaggaaaccgttaccattactgagtttagtaatggtaatggttctcttgctg 63
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 9 tggcgaggaaaccgttaccattactgagtttagtaatggtaacggttctctggctg 64
>RF00722;mir-451;AAGU02141945.1/2025-1955 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 93.7 bits (47), Expect = 3e-19
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 17 aaccgttaccattactgagtttagtaatggtaatggttctcttgctg 63
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 aaccgttaccattactgagtttagtaatggtaatggttctcttgctg 63
>RF00722;mir-451;ABQO010853698.1/772-701 9315:Macropus eugenii
(tammar wallaby)
Length = 72
Score = 87.7 bits (44), Expect = 2e-17
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 12 gaggaaaccgttaccattactgagtttagtaatggtaatggttctcttgctg 63
|||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 13 gaggaaaccgttaccattactgtgtttagtaatggtaacggttctcttgctg 64
>RF00722;mir-451;ABQF01026376.1/875-804 59729:Taeniopygia guttata
Length = 72
Score = 79.8 bits (40), Expect = 4e-15
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 9 ggcgaggaaaccgttaccattactgagtttagtaatggtaatggttct 56
|||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 10 ggcggggaaaccgttaccattactgagtttagtaatggtaacggttct 57
>RF00722;mir-451;AADN02025858.1/509-580 9031:Gallus gallus
(chicken)
Length = 72
Score = 77.8 bits (39), Expect = 2e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 14 ggaaaccgttaccattactgagtttagtaatggtaatggttct 56
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 15 ggaaaccgttaccattactgagtttagtaatggtaacggttct 57
>RF00722;mir-451;AAFR03044825.1/5420-5349 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 72
Score = 75.8 bits (38), Expect = 6e-14
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 8 tggcgaggaaaccgttaccattactgagtttagtaatggtaatggttctc 57
||||| |||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 9 tggcggggaaaccgttaccattactgtgtttagtaatggtaagggttctc 58
>RF00722;mir-451;BX548073.8/159677-159748 7955:Danio rerio
(zebrafish)
Length = 72
Score = 75.8 bits (38), Expect = 6e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 15 gaaaccgttaccattactgagtttagtaatggtaatggttct 56
||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 16 gaaaccgttaccattactgagtttagtaatggtaagggttct 57
>RF00722;mir-451;BAAF04033966.1/3754-3826 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 71.9 bits (36), Expect = 9e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 16 aaaccgttaccattactgagtttagtaatggtaatggttc 55
|||||||||||||||||||||||||||||||||| |||||
Sbjct: 17 aaaccgttaccattactgagtttagtaatggtaagggttc 56
>RF00722;mir-451;CAAB01000931.1/60591-60519 31033:Takifugu
rubripes
Length = 73
Score = 50.1 bits (25), Expect = 3e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 16 aaaccgttaccattactgagttt-agtaatggtaatggttc 55
||||||||||||||||||||||| ||| ||||||| |||||
Sbjct: 17 aaaccgttaccattactgagtttcagttatggtaagggttc 57
>RF00722;mir-451;AANH01000562.1/126354-126425 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 16 aaaccgttaccattactgagttt-agtaatggtaatggtt 54
||||||||||||||||||||||| ||| ||||||| ||||
Sbjct: 17 aaaccgttaccattactgagtttcagttatggtaagggtt 56
