miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AACN010421419.1/1043-964 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 115 bits (58), Expect = 6e-26
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 1 gaagttgcccgtgttattttcgcttgatacgtgccgaaacaaacatggtgcacttctt 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gaagttgcccgtgttattttcgcttgatacgtgccgaaacaaacatggtgcacttctt 70
>RF00641;mir-154;AAIY01434920.1/105-183 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 83.8 bits (42), Expect = 2e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 1 gaagttgcccgtgttattttcgcttgatacgtgccgaaacaaacatggtgcacttctt 58
|||||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct: 12 gaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttctt 69
>RF00641;mir-154;ABRQ01054369.1/2520-2599 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 83.8 bits (42), Expect = 2e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 1 gaagttgcccgtgttattttcgcttgatacgtgccgaaacaaacatggtgcacttctt 58
|||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 13 gaagttgcccatgttcttttcgctttatacgtgacgaaacaaacatggtgcacttctt 70
>RF00641;mir-154;AAPY01359973.1/4034-4113 37347:Tupaia belangeri
(northern tree shrew)
Length = 80
Score = 75.8 bits (38), Expect = 5e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 gaagttgcccgtgttattttcgcttgatacgtgccgaaacaaacatggtgcacttctt 58
|||| |||||||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct: 13 gaagctgcccgtgttattttcgctttatgtgtgacgaaacaaacatggtgcacttctt 70
>RF00641;mir-154;AAFC03086346.1/3792-3714 9913:Bos taurus (cattle)
Length = 79
Score = 67.9 bits (34), Expect = 1e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 1 gaagttgcccgtgttattttcgcttgatacgtgccgaaacaaacatggtgcacttctt 58
|||||||||| |||| |||||||| |||| ||| ||||||||||||||||||||||||
Sbjct: 13 gaagttgcccatgttcttttcgct-gatatgtgacgaaacaaacatggtgcacttctt 69
>RF00641;mir-154;AAYZ01424897.1/1412-1491 9978:Ochotona princeps
(American pika)
Length = 80
Score = 67.9 bits (34), Expect = 1e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 1 gaagttgcccgtgttattttcgcttgatacgtgccgaaacaaacatggtgcacttctt 58
||||| |||| |||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 13 gaagtcgcccatgttcttttcgctgaatatgtgccgaaacaaacatggtgcacttctt 70
