miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33404_bta-mir-500:mirbase
Length = 84
Score = 117 bits (59), Expect = 8e-28
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 72
>27211_eca-mir-500-2:mirbase
Length = 84
Score = 115 bits (58), Expect = 3e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 71
>27941_mml-mir-500:mirbase
Length = 84
Score = 109 bits (55), Expect = 2e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 14 aatccttgctacctgggtgagagtgctatctgaatgcaatgcacctgggcaaggattct 72
>28694_hsa-mir-500a:mirbase
Length = 84
Score = 109 bits (55), Expect = 2e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 14 aatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaaggattct 72
>30403_ptr-mir-500:mirbase
Length = 83
Score = 109 bits (55), Expect = 2e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 13 aatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaaggattct 71
>31040_ppy-mir-500:mirbase
Length = 84
Score = 109 bits (55), Expect = 2e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 14 aatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaaggattct 72
>34114_ssc-mir-500:mirbase
Length = 80
Score = 101 bits (51), Expect = 5e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 10 aatccttgctacctgggtgagagtgctgtgtgaatgcaatgcacctgggcaaggattct 68
>27210_eca-mir-500:mirbase
Length = 84
Score = 99.6 bits (50), Expect = 2e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 14 aatccttgctacctgggtgagagtgttgtctgaatgcaatgcacctgggcaaggattc 71
>28695_hsa-mir-500b:mirbase
Length = 79
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 11 aatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaaggattct 69
>30404_ptr-mir-500-2:mirbase
Length = 79
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 12 aatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaaggattct 70
>28696_hsa-mir-501:mirbase
Length = 84
Score = 87.7 bits (44), Expect = 7e-19
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 12 cctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 25 cctgggtgagagtgctttctgaatgcaatgcacccgggcaaggattct 72
>28697_hsa-mir-501:mirbase
Length = 84
Score = 87.7 bits (44), Expect = 7e-19
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 12 cctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 25 cctgggtgagagtgctttctgaatgcaatgcacccgggcaaggattct 72
>30405_ptr-mir-501:mirbase
Length = 83
Score = 87.7 bits (44), Expect = 7e-19
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 12 cctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24 cctgggtgagagtgctttctgaatgcaatgcacccgggcaaggattct 71
>27212_eca-mir-501:mirbase
Length = 84
Score = 85.7 bits (43), Expect = 3e-18
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 12 cctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 25 cctgggtgagagtgctttccgaatgcaatgcacctgggcaaggattc 71
>26869_cfa-mir-502:mirbase
Length = 59
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 58
>27213_eca-mir-502:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 15 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 72
>27214_eca-mir-502:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 15 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 72
>27943_mml-mir-502:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 9 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 66
>27944_mml-mir-502:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 9 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 66
>31041_ppy-mir-501:mirbase
Length = 78
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 8 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 65
>31042_ppy-mir-502:mirbase
Length = 86
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 15 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 72
>31043_ppy-mir-502:mirbase
Length = 86
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct: 15 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 72
>27942_mml-mir-501:mirbase
Length = 84
Score = 71.9 bits (36), Expect = 4e-14
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 12 cctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 25 cctgggtgagagtgctttctgaatgcagtgcacccaggcaaggattct 72
>33407_bta-mir-502b:mirbase
Length = 83
Score = 71.9 bits (36), Expect = 4e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 16 ggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
|||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 28 ggtgagagtgctttgtgaatgcaatccacctgggcaaggattct 71
>28698_hsa-mir-502:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 7e-13
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||
Sbjct: 15 aatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaaggattc 72
>28699_hsa-mir-502:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 7e-13
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||
Sbjct: 15 aatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaaggattc 72
>30406_ptr-mir-502:mirbase
Length = 85
Score = 67.9 bits (34), Expect = 7e-13
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||
Sbjct: 14 aatccttgctatctgggtgctagtgctggctcaatgcaatgcacctgggcaaggattc 71
>33405_bta-mir-502a-1:mirbase
Length = 85
Score = 60.0 bits (30), Expect = 2e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
|||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||
Sbjct: 14 aatccttgctctctgggtgctagtgctgtctccatgcaatgcacctgggcaaggattc 71
>32188_mmu-mir-500:mirbase
Length = 92
Score = 54.0 bits (27), Expect = 1e-08
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgag-agtgctttctgaatgcaatgcacctgggcaagg 54
||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||
Sbjct: 21 aatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctgggcaagg 75
>32941_rno-mir-500:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgag-agtgctttctgaatgcaatgcacctgggcaagg 54
||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||
Sbjct: 11 aatccttgctatctgggtgcttagtgctatctcaatgcaatgcacctgggcaagg 65
>33406_bta-mir-502a-2:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 6e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 35 tgcaatgcacctgggcaaggattc 58
||||||||||||||||||||||||
Sbjct: 55 tgcaatgcacctgggcaaggattc 78
>32189_mmu-mir-501:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 1e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 12 cctgggtgagagtgctttctgaatgcaatgcacctgggcaaggatt 57
||||||||| | |||| | || |||||||||||| |||||||||||
Sbjct: 35 cctgggtgaaaatgctatttgtatgcaatgcacccgggcaaggatt 80
>32190_mmu-mir-501:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 1e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 12 cctgggtgagagtgctttctgaatgcaatgcacctgggcaaggatt 57
||||||||| | |||| | || |||||||||||| |||||||||||
Sbjct: 35 cctgggtgaaaatgctatttgtatgcaatgcacccgggcaaggatt 80
>32942_rno-mir-501:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 12 cctgggtgagagtgctttctgaatgcaatgcacctgggcaaggatt 57
||||||||| | |||| | || |||||||||||| |||||||||||
Sbjct: 25 cctgggtgaaaatgctatttgtatgcaatgcacccgggcaaggatt 70
>33052_rno-mir-3560:mirbase
Length = 112
Score = 44.1 bits (22), Expect = 1e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 12 cctgggtgagagtgctttctgaatgcaatgcacctgggcaaggatt 57
||||||||| | |||| | || |||||||||||| |||||||||||
Sbjct: 77 cctgggtgaaaatgctatttgtatgcaatgcacccgggcaaggatt 32
