miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01903;mir-500;ABRR01444762.1/851-940 30538:Lama pacos (alpaca)
Length = 90
Score = 109 bits (55), Expect = 4e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 19 aatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaaggattct 77
>RF01903;mir-500;AAPY01377727.1/1385-1474 37347:Tupaia belangeri
(northern tree shrew)
Length = 90
Score = 101 bits (51), Expect = 9e-22
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 19 aatccttgctacctgggtgagagtgctttctgaatgcaattcacctaggcaaggattct 77
>RF01903;mir-500;AAGW01126437.1/5760-5849 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 99.6 bits (50), Expect = 3e-21
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 19 aatccttgctacctgggtgagagtgctaactgaatgcaatgcacctgggcaaggattc 76
>RF01903;mir-500;AANU01113554.1/19321-19232 9544:Macaca mulatta
(rhesus monkey)
Length = 90
Score = 93.7 bits (47), Expect = 2e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 19 aatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaaggattct 77
>RF01903;mir-500;AAKN02053571.1/48125-48214 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 93.7 bits (47), Expect = 2e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct: 19 aatccttgctacctgggtgagagtgctttgtgaatgcagtgcacctgggcaagggttct 77
>RF01903;mir-500;CABD01395115.2/3352-3441 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 90
Score = 87.7 bits (44), Expect = 1e-17
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 12 cctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 30 cctgggtgagagtgctttctgaatgcaatgcacccgggcaaggattct 77
>RF01903;mir-500;AAWR02023860.1/12501-12589 9796:Equus caballus
(horse)
Length = 89
Score = 85.7 bits (43), Expect = 5e-17
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 12 cctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 30 cctgggtgagagtgctttccgaatgcaatgcacctgggcaaggattc 76
>RF01903;mir-500;AALT01601729.1/736-647 42254:Sorex araneus
(European shrew)
Length = 90
Score = 85.7 bits (43), Expect = 5e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 19 aatccttgctacctgggtgagaatgcttttgaaatgcaatgcacctgggcaaggattct 77
>RF01903;mir-500;AAQQ01366224.1/356-445 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 90
Score = 83.8 bits (42), Expect = 2e-16
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaagg 54
||||||||||| |||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 19 aatccttgctatctgggtgagagtgctttccgaatgcagtgcacctgggcaagg 72
>RF01903;mir-500;AALT01601729.1/2904-2815 42254:Sorex araneus
(European shrew)
Length = 90
Score = 77.8 bits (39), Expect = 1e-14
Identities = 55/59 (93%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctggg-caaggattc 58
|||||||| ||||||||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct: 19 aatccttgttacctgggtgagaatgctttcagaatgcaatgcacctgggacaaggattc 77
>RF01903;mir-500;ABRT010259438.1/4434-4523 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 77.8 bits (39), Expect = 1e-14
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 12 cctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
|||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 30 cctgggtgagagtgctttctaaatgcaatgcacccgggcaaggattc 76
>RF01903;mir-500;AALT01601729.1/3692-3602 42254:Sorex araneus
(European shrew)
Length = 91
Score = 75.8 bits (38), Expect = 5e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
|||||||||||||||| || |||||||||| |||||||||||||||||||||||||
Sbjct: 19 aatccttgctacctggttgctagtgctttctatatgcaatgcacctgggcaaggattc 76
>RF01903;mir-500;AAFC03003598.1/91611-91523 9913:Bos taurus
(cattle)
Length = 89
Score = 71.9 bits (36), Expect = 8e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 16 ggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
|||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 33 ggtgagagtgctttgtgaatgcaatccacctgggcaaggattct 76
>RF01903;mir-500;ABRO01329853.1/364-457 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 69.9 bits (35), Expect = 3e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 24 tgctttctgaatgcaatgcacctgggcaaggattc 58
|||||||||||||||||||||||||||||||||||
Sbjct: 46 tgctttctgaatgcaatgcacctgggcaaggattc 80
>RF01903;mir-500;AAGU02358869.1/7585-7674 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 67.9 bits (34), Expect = 1e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| |||||| ||| |||||||||||||| |||||||||||
Sbjct: 19 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctaggcaaggattc 76
>RF01903;mir-500;AAKN02053571.1/46149-46243 10141:Cavia porcellus
(domestic guinea pig)
Length = 95
Score = 65.9 bits (33), Expect = 5e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaag 53
||||||||||||| | ||||||||||| ||| ||||||||||| |||||||||
Sbjct: 19 aatccttgctacccgagtgagagtgctgtctcaatgcaatgcatctgggcaag 71
>RF01903;mir-500;AAPY01377726.1/2576-2664 37347:Tupaia belangeri
(northern tree shrew)
Length = 89
Score = 61.9 bits (31), Expect = 7e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
|||||||||||||||||||||| |||| ||| |||||||| ||||| ||||||||||
Sbjct: 18 aatccttgctacctgggtgagaatgctatctctgtgcaatgctcctggacaaggattct 76
>RF01903;mir-500;AAFC03003598.1/85766-85678 9913:Bos taurus
(cattle)
Length = 89
Score = 60.0 bits (30), Expect = 3e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
|||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||
Sbjct: 18 aatccttgctctctgggtgctagtgctgtctccatgcaatgcacctgggcaaggattc 75
>RF01903;mir-500;ABRP01179571.1/608-696 132908:Pteropus vampyrus
(large flying fox)
Length = 89
Score = 54.0 bits (27), Expect = 2e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 13 ctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattct 59
|||| ||||||||||||| |||||||||||| |||||||||||||
Sbjct: 31 ctggttgagagtgctttcaaaatgcaatgcactggggcaaggattct 77
>RF01903;mir-500;AAEX02025396.1/212337-212249 9615:Canis lupus
familiaris (dog)
Length = 89
Score = 52.0 bits (26), Expect = 7e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 12 cctgggtgagagtgctttctgaatgcaatgcacc 45
|||| ||||||||||||||| |||||||||||||
Sbjct: 30 cctgagtgagagtgctttctaaatgcaatgcacc 63
>RF01903;mir-500;ABRT010259437.1/774-863 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 52.0 bits (26), Expect = 7e-07
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggattc 58
|||||||| ||||||| || |||||||||| |||||||| ||||||||||||||||
Sbjct: 19 aatccttgatacctgg-tgctagtgctttctacatgcaatggacctgggcaaggattc 75
>RF01903;mir-500;ABDC01288936.1/7113-7202 30608:Microcebus murinus
(gray mouse lemur)
Length = 90
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 34 atgcaatgcacctgggcaaggattc 58
|||||||||||||||||||||||||
Sbjct: 52 atgcaatgcacctgggcaaggattc 76
>RF01903;mir-500;AAGW01126437.1/3638-3727 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 50.1 bits (25), Expect = 3e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 1 aatccttgctacctgggtgagagtgctttctgaatgcaatgcacctgggcaaggatt 57
|||||||| ||||||| || |||||||||| |||||||||||||||||||||||
Sbjct: 19 aatccttgatacctgg-tgttagtgctttctatgtgcaatgcacctgggcaaggatt 74
>RF01903;mir-500;AL663104.17/15029-14940 10090:Mus musculus (house
mouse)
Length = 90
Score = 44.1 bits (22), Expect = 2e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 12 cctgggtgagagtgctttctgaatgcaatgcacctgggcaaggatt 57
||||||||| | |||| | || |||||||||||| |||||||||||
Sbjct: 30 cctgggtgaaaatgctatttgtatgcaatgcacccgggcaaggatt 75
>RF01903;mir-500;AAKN02053571.1/44085-44175 10141:Cavia porcellus
(domestic guinea pig)
Length = 91
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 34 atgcaatgcacctgggcaaggattc 58
||||| |||||||||||||||||||
Sbjct: 52 atgcagtgcacctgggcaaggattc 76
