miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01903;mir-500;AAGU02358869.1/7585-7674 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 109 bits (55), Expect = 4e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattca 59
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 19 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctaggcaaggattca 77
>RF01903;mir-500;AAFC03003598.1/85766-85678 9913:Bos taurus
(cattle)
Length = 89
Score = 101 bits (51), Expect = 9e-22
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattca 59
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 18 aatccttgctctctgggtgctagtgctgtctccatgcaatgcacctgggcaaggattca 76
>RF01903;mir-500;ABDC01288936.1/7113-7202 30608:Microcebus murinus
(gray mouse lemur)
Length = 90
Score = 85.7 bits (43), Expect = 5e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattca 59
|||||||||| ||||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct: 19 aatccttgctgtctgggtgctaatgctgtgtcgatgcaatgcacctgggcaaggattca 77
>RF01903;mir-500;ABRR01444762.1/851-940 30538:Lama pacos (alpaca)
Length = 90
Score = 83.8 bits (42), Expect = 2e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 19 aatccttgctacctgggtgagagtgctgtctgaatgcaatgcacctgggcaaggattc 76
>RF01903;mir-500;AALT01601729.1/3692-3602 42254:Sorex araneus
(European shrew)
Length = 91
Score = 77.8 bits (39), Expect = 1e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattca 59
||||||||||| |||| |||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 19 aatccttgctacctggttgctagtgctttctatatgcaatgcacctgggcaaggattca 77
>RF01903;mir-500;AAGW01126437.1/5760-5849 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 69.9 bits (35), Expect = 3e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattca 59
||||||||||| ||||||| |||||| || |||||||||||||||||||||||||||
Sbjct: 19 aatccttgctacctgggtgagagtgctaactgaatgcaatgcacctgggcaaggattca 77
>RF01903;mir-500;AAIY01038584.1/399-317 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 65.9 bits (33), Expect = 5e-11
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 10 tatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 58
|||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 24 tatctgggtgctagtgctatctcaatgcaatgcacccaggcaaagattc 72
>RF01903;mir-500;AAPY01377727.1/1385-1474 37347:Tupaia belangeri
(northern tree shrew)
Length = 90
Score = 60.0 bits (30), Expect = 3e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| |||||| ||| |||||||| ||||| |||||||||||
Sbjct: 19 aatccttgctacctgggtgagagtgctttctgaatgcaattcacctaggcaaggattc 76
>RF01903;mir-500;AAQQ01366224.1/356-445 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 90
Score = 60.0 bits (30), Expect = 3e-09
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaagg 54
||||||||||||||||||| |||||| || |||||| |||||||||||||||
Sbjct: 19 aatccttgctatctgggtgagagtgctttccgaatgcagtgcacctgggcaagg 72
>RF01903;mir-500;AAKN02053571.1/46149-46243 10141:Cavia porcellus
(domestic guinea pig)
Length = 95
Score = 58.0 bits (29), Expect = 1e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaag 53
||||||||||| | | ||| |||||||||||||||||||||| |||||||||
Sbjct: 19 aatccttgctacccgagtgagagtgctgtctcaatgcaatgcatctgggcaag 71
>RF01903;mir-500;ABRT010259437.1/774-863 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 56.0 bits (28), Expect = 5e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 16 ggtgctagtgctgtctcaatgcaatgcacctgggcaaggattca 59
|||||||||||| ||| |||||||| |||||||||||||||||
Sbjct: 33 ggtgctagtgctttctacatgcaatggacctgggcaaggattca 76
>RF01903;mir-500;ABRO01329853.1/364-457 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 24 tgctgtctcaatgcaatgcacctgggcaaggattc 58
|||| ||| ||||||||||||||||||||||||||
Sbjct: 46 tgctttctgaatgcaatgcacctgggcaaggattc 80
>RF01903;mir-500;AAWR02023860.1/12501-12589 9796:Equus caballus
(horse)
Length = 89
Score = 52.0 bits (26), Expect = 7e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 33 aatgcaatgcacctgggcaaggattc 58
||||||||||||||||||||||||||
Sbjct: 51 aatgcaatgcacctgggcaaggattc 76
>RF01903;mir-500;AALT01601729.1/736-647 42254:Sorex araneus
(European shrew)
Length = 90
Score = 52.0 bits (26), Expect = 7e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 33 aatgcaatgcacctgggcaaggattc 58
||||||||||||||||||||||||||
Sbjct: 51 aatgcaatgcacctgggcaaggattc 76
>RF01903;mir-500;ABRT010259438.1/4434-4523 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 52.0 bits (26), Expect = 7e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 13 ctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 58
||||||| |||||| ||| ||||||||||||| ||||||||||||
Sbjct: 31 ctgggtgagagtgctttctaaatgcaatgcacccgggcaaggattc 76
>RF01903;mir-500;CABD01395115.2/3352-3441 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 90
Score = 52.0 bits (26), Expect = 7e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 13 ctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 58
||||||| |||||| ||| ||||||||||||| ||||||||||||
Sbjct: 31 ctgggtgagagtgctttctgaatgcaatgcacccgggcaaggattc 76
>RF01903;mir-500;AANU01113554.1/19321-19232 9544:Macaca mulatta
(rhesus monkey)
Length = 90
Score = 52.0 bits (26), Expect = 7e-07
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| |||||| ||| |||||| |||||| |||||||||||
Sbjct: 19 aatccttgctacctgggtgagagtgctttctgaatgcagtgcacccaggcaaggattc 76
>RF01903;mir-500;AAKN02053571.1/48125-48214 10141:Cavia porcellus
(domestic guinea pig)
Length = 90
Score = 52.0 bits (26), Expect = 7e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaagg 54
||||||||||| ||||||| |||||| | | |||||| |||||||||||||||
Sbjct: 19 aatccttgctacctgggtgagagtgctttgtgaatgcagtgcacctgggcaagg 72
>RF01903;mir-500;AAGU02358869.1/3530-3617 9785:Loxodonta africana
(African savanna elephant)
Length = 88
Score = 48.1 bits (24), Expect = 1e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 23 gtgctgtctcaatgcaatgcacctgggcaaggattc 58
|||||||||||||||| ||||| |||||||| ||||
Sbjct: 41 gtgctgtctcaatgcagtgcacatgggcaagcattc 76
>RF01903;mir-500;AAGW01126437.1/3638-3727 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 35 tgcaatgcacctgggcaaggatt 57
|||||||||||||||||||||||
Sbjct: 52 tgcaatgcacctgggcaaggatt 74
>RF01903;mir-500;AAFC03003598.1/91611-91523 9913:Bos taurus
(cattle)
Length = 89
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 33 aatgcaatgcacctgggcaaggattc 58
|||||||| |||||||||||||||||
Sbjct: 50 aatgcaatccacctgggcaaggattc 75
>RF01903;mir-500;AAPY01377726.1/2576-2664 37347:Tupaia belangeri
(northern tree shrew)
Length = 89
Score = 44.1 bits (22), Expect = 2e-04
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 1 aatccttgctatctgggtgctagtgctgtctcaatgcaatgcacctgggcaaggattc 58
||||||||||| ||||||| | |||| |||| |||||||| ||||| |||||||||
Sbjct: 18 aatccttgctacctgggtgagaatgctatctctgtgcaatgctcctggacaaggattc 75
>RF01903;mir-500;AAKN02053571.1/44085-44175 10141:Cavia porcellus
(domestic guinea pig)
Length = 91
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 atgcaatgcacctgggcaaggattca 59
||||| ||||||||||||||||||||
Sbjct: 52 atgcagtgcacctgggcaaggattca 77
