miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGW01206554.1/1585-1664 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 119 bits (60), Expect = 5e-27
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttcgctgtgtttgtgaggaatcatacaaggac 60
|||||||||||||||||||||||||||||||||| | || |||| |||||||||||||||
Sbjct: 3 tacttgaggagaaattatccttggtgtgttcgctttattcgtgatgaatcatacaaggac 62
Query: 61 aatttctttttgagta 76
||||||||||||||||
Sbjct: 63 aatttctttttgagta 78
>RF00641;mir-154;AABR04040370.1/14458-14381 10116:Rattus
norvegicus (Norway rat)
Length = 78
Score = 71.9 bits (36), Expect = 1e-12
Identities = 68/76 (89%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgttcgctgtgtttgtgaggaatcatacaaggac 60
|||||||||||||||||||||||||||||| ||| | |||| || |||||||||||||
Sbjct: 3 tacttgaggagaaattatccttggtgtgtttgctct-tttg-gatgaatcatacaagggt 60
Query: 61 aatttctttttgagta 76
|||||||||| |||||
Sbjct: 61 aatttcttttcgagta 76
>RF00641;mir-154;AAIY01699599.1/4687-4765 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tacttgaggagaaattatccttggtgtgtt 30
||||||||||||||||| ||||||||||||
Sbjct: 3 tacttgaggagaaattacccttggtgtgtt 32
>RF00641;mir-154;AAQR01332678.1/6090-6172 30611:Otolemur garnettii
(small-eared galago)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 48 atcatacaaggacaatttctttttgagta 76
||||||||||||||||||||||| |||||
Sbjct: 53 atcatacaaggacaatttcttttagagta 81
