miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30492_ptr-mir-551a:mirbase
Length = 95
Score = 131 bits (66), Expect = 1e-31
Identities = 87/94 (92%)
Strand = Plus / Plus
Query: 1 ggggactgccaggtgaccctggaaatccagagtgggtaaggcctgtctgattgtgtctag 60
|||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct: 1 ggggactgccgggtgaccctggaaatccagagtgggtggggcctgtctgaccgtttctag 60
Query: 61 gcgacccactcttggtttccatggttgccctgga 94
||||||||||||||||||||| ||||||||||||
Sbjct: 61 gcgacccactcttggtttccagggttgccctgga 94
>31134_ppy-mir-551a:mirbase
Length = 96
Score = 131 bits (66), Expect = 1e-31
Identities = 87/94 (92%)
Strand = Plus / Plus
Query: 1 ggggactgccaggtgaccctggaaatccagagtgggtaaggcctgtctgattgtgtctag 60
|||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct: 1 ggggactgccgggtgaccctggaaatccagagtgggtggggcctgtctgaccgtttctag 60
Query: 61 gcgacccactcttggtttccatggttgccctgga 94
||||||||||||||||||||| ||||||||||||
Sbjct: 61 gcgacccactcttggtttccagggttgccctgga 94
>28005_mml-mir-551a:mirbase
Length = 96
Score = 123 bits (62), Expect = 2e-29
Identities = 86/94 (91%)
Strand = Plus / Plus
Query: 1 ggggactgccaggtgaccctggaaatccagagtgggtaaggcctgtctgattgtgtctag 60
|||||||||| |||||||||||||||||||||||||| ||||||||||| | |||||
Sbjct: 1 ggggactgccgggtgaccctggaaatccagagtgggtggggcctgtctgaccatttctag 60
Query: 61 gcgacccactcttggtttccatggttgccctgga 94
||||||||||||||||||||| ||||||||||||
Sbjct: 61 gcgacccactcttggtttccagggttgccctgga 94
>28863_hsa-mir-551a:mirbase
Length = 96
Score = 123 bits (62), Expect = 2e-29
Identities = 86/94 (91%)
Strand = Plus / Plus
Query: 1 ggggactgccaggtgaccctggaaatccagagtgggtaaggcctgtctgattgtgtctag 60
|||||||||| |||||||||||||||||||||||||| |||| |||||| || |||||
Sbjct: 1 ggggactgccgggtgaccctggaaatccagagtgggtggggccagtctgaccgtttctag 60
Query: 61 gcgacccactcttggtttccatggttgccctgga 94
||||||||||||||||||||| ||||||||||||
Sbjct: 61 gcgacccactcttggtttccagggttgccctgga 94
>27233_eca-mir-551a:mirbase
Length = 62
Score = 83.8 bits (42), Expect = 2e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 20 tggaaatccagagtgggtaaggcctgtctgattgtgtctaggcgacccactcttggtttc 79
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct: 1 tggaaatccagagtgggtgaggcctgtctgaccatttctaggcgacccactcttggtttc 60
Query: 80 ca 81
||
Sbjct: 61 ca 62
>33419_bta-mir-551a:mirbase
Length = 95
Score = 81.8 bits (41), Expect = 8e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 22 gaaatccagagtgggtaaggcctgtctgattgtgtctaggcgacccactcttggtttcca 81
|||| |||||| ||| |||||||||||| ||| ||| ||||||||| ||||||||||||
Sbjct: 21 gaaacccagagcaggtgaggcctgtctgactgtttctgggcgacccaatcttggtttcca 80
Query: 82 tggttgccctgga 94
|||||||||||||
Sbjct: 81 tggttgccctgga 93
>27457_mdo-mir-551a:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 14 tgaccctggaaatccagagtgggtaaggcctgtctgattgtgtctaggcgacccactctt 73
|||||||||||||||||| |||| |||||| || || ||||||||||||| ||||
Sbjct: 1 tgaccctggaaatccagaaggggtggagcctgttggacagtttctaggcgacccattctt 60
Query: 74 ggtttccatggttgccctgga 94
|||||| | ||||||| ||||
Sbjct: 61 ggtttcaagggttgccatgga 81
