miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00892;mir-551;AAGU02438627.1/1313-1227 9785:Loxodonta africana
(African savanna elephant)
Length = 87
Score = 109 bits (55), Expect = 6e-24
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 8 gccaggtgaccctggaaatccagagtgggtaaggcctgtctgattgtgtctaggcgaccc 67
|||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct: 1 gccaggtgaccctggaaatccagagtgggtgaggcctgtctgaccctttctaggcgaccc 60
Query: 68 actcttggtttccatggttgccctgga 94
| |||||||||| | ||||||||||||
Sbjct: 61 attcttggtttcgagggttgccctgga 87
>RF00892;mir-551;AADC01000147.1/1258-1173 9606:Homo sapiens
(human)
Length = 86
Score = 107 bits (54), Expect = 3e-23
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 12 ggtgaccctggaaatccagagtgggtaaggcctgtctgattgtgtctaggcgacccactc 71
|||||||||||||||||||||||||| |||| |||||| || ||||||||||||||||
Sbjct: 5 ggtgaccctggaaatccagagtgggtggggccagtctgaccgtttctaggcgacccactc 64
Query: 72 ttggtttccatggttgccctgg 93
|||||||||| |||||||||||
Sbjct: 65 ttggtttccagggttgccctgg 86
>RF00892;mir-551;AAQR01640449.1/259-174 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 91.7 bits (46), Expect = 2e-18
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 8 gccaggtgaccctggaaatccagagtgggtaaggcctgtctgattgtgtctaggcgaccc 67
|||||||||||||||||||||||||||||| ||||||||||| || || |||||||||
Sbjct: 1 gccaggtgaccctggaaatccagagtgggtgaggcctgtctggccgtttccaggcgaccc 60
Query: 68 actcttggtttcca 81
|||| |||||||||
Sbjct: 61 actcatggtttcca 74
>RF00892;mir-551;AAGV020839576.1/977-1062 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 86
Score = 85.7 bits (43), Expect = 9e-17
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 19 ctggaaatccagagtgggtaaggcctgtctgattgtgtctaggcgacccactcttggttt 78
||||||||||||||||||| |||||||||||| | ||||||||||||| |||||||||
Sbjct: 12 ctggaaatccagagtgggtgaggcctgtctgaccctttctaggcgacccattcttggttt 71
Query: 79 ccatggttgccctgg 93
| | |||||||||||
Sbjct: 72 caagggttgccctgg 86
>RF00892;mir-551;AAFC03055164.1/49690-49606 9913:Bos taurus
(cattle)
Length = 85
Score = 79.8 bits (40), Expect = 6e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 22 gaaatccagagtgggtaaggcctgtctgattgtgtctaggcgacccactcttggtttcca 81
|||| |||||| ||| |||||||||||| ||| ||| ||||||||| ||||||||||||
Sbjct: 14 gaaacccagagcaggtgaggcctgtctgactgtttctgggcgacccaatcttggtttcca 73
Query: 82 tggttgccctgg 93
||||||||||||
Sbjct: 74 tggttgccctgg 85
>RF00892;mir-551;AAFR03065316.1/1308-1223 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 14 tgaccctggaaatccagagtgggtaaggcctgtctgattgtgtctaggcgacccactctt 73
|||||||||||||||||| |||| |||||| || || ||||||||||||| ||||
Sbjct: 7 tgaccctggaaatccagaaggggtggagcctgttggacagtttctaggcgacccattctt 66
Query: 74 ggtttccatggttgcc 89
|||||| | |||||||
Sbjct: 67 ggtttcaagggttgcc 82
