miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30493_ptr-mir-551b:mirbase
Length = 94
Score = 155 bits (78), Expect = 6e-39
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 1 gtgctctcctggcccatgaaatcaagtgtgggtgagacctggtgcacagcgggaaggcga 60
|||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||
Sbjct: 4 gtgctctcctggcccatgaaatcaagcgtgggtgagacctggtgcagaacgggaaggcga 63
Query: 61 cccatacttggtttcagaggctgcgagaat 90
||||||||||||||||||||||||||||||
Sbjct: 64 cccatacttggtttcagaggctgcgagaat 93
>31135_ppy-mir-551b:mirbase
Length = 95
Score = 155 bits (78), Expect = 6e-39
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 1 gtgctctcctggcccatgaaatcaagtgtgggtgagacctggtgcacagcgggaaggcga 60
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 5 gtgctctcctggcccatgaaatcaagtgtgggtgagacctggtgcagaacgggaaggcga 64
Query: 61 cccatacttggtttcagaggctgcgagaat 90
||||||||||||||||||||||| ||||||
Sbjct: 65 cccatacttggtttcagaggctgtgagaat 94
>28006_mml-mir-551b:mirbase
Length = 95
Score = 147 bits (74), Expect = 2e-36
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 1 gtgctctcctggcccatgaaatcaagtgtgggtgagacctggtgcacagcgggaaggcga 60
|||||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||
Sbjct: 5 gtgctctcctggcccatgaaatcaagcgtgggtgagacctggtgcagaacaggaaggcga 64
Query: 61 cccatacttggtttcagaggctgcgagaat 90
||||||||||||||||||||||||||||||
Sbjct: 65 cccatacttggtttcagaggctgcgagaat 94
>28864_hsa-mir-551b:mirbase
Length = 96
Score = 147 bits (74), Expect = 2e-36
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 1 gtgctctcctggcccatgaaatcaagtgtgggtgagacctggtgcacagcgggaaggcga 60
|||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||
Sbjct: 5 gtgctctcctggcccatgaaatcaagcgtgggtgagacctggtgcagaacgggaaggcga 64
Query: 61 cccatacttggtttcagaggctgcgagaat 90
||||||||||||||||||||||| ||||||
Sbjct: 65 cccatacttggtttcagaggctgtgagaat 94
>33420_bta-mir-551b:mirbase
Length = 95
Score = 115 bits (58), Expect = 5e-27
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 5 tctcctggcccatgaaatcaagtgtgggtgagacctggtgcacagcgggaaggcgaccca 64
|||||||||| | ||||||||| ||||||||||||||||||| | | |||||||||||||
Sbjct: 9 tctcctggcctaagaaatcaagcgtgggtgagacctggtgcagaacaggaaggcgaccca 68
Query: 65 tacttggtttcagaggctgcgagaat 90
||||||||||||||||||| ||||||
Sbjct: 69 tacttggtttcagaggctgtgagaat 94
>32213_mmu-mir-551b:mirbase
Length = 98
Score = 107 bits (54), Expect = 1e-24
Identities = 81/90 (90%)
Strand = Plus / Plus
Query: 1 gtgctctcctggcccatgaaatcaagtgtgggtgagacctggtgcacagcgggaaggcga 60
||||||| ||||||||||||||||| |||||||||||||||||| | | |||||||||
Sbjct: 1 gtgctcttgtggcccatgaaatcaagcttgggtgagacctggtgcagaacaggaaggcga 60
Query: 61 cccatacttggtttcagaggctgcgagaat 90
||||||||||||||||| |||||| |||||
Sbjct: 61 cccatacttggtttcagtggctgcaagaat 90
>27234_eca-mir-551b:mirbase
Length = 62
Score = 99.6 bits (50), Expect = 3e-22
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 16 atgaaatcaagtgtgggtgagacctggtgcacagcgggaaggcgacccatacttggtttc 75
||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 1 atgaaatcaagcgtgggtgagacctggtgcagaacgggaaggcgacccatacttggtttc 60
Query: 76 ag 77
||
Sbjct: 61 ag 62
>32957_rno-mir-551b:mirbase
Length = 98
Score = 99.6 bits (50), Expect = 3e-22
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 1 gtgctctcctggcccatgaaatcaagtgtgggtgagacctggtgcacagcgggaaggcga 60
||||||| ||||||||||||||||| ||||||||||||||| || | | |||||||||
Sbjct: 1 gtgctcttgtggcccatgaaatcaagcttgggtgagacctggtacagaacaggaaggcga 60
Query: 61 cccatacttggtttcagaggctgcgagaat 90
||||||||||||||||| |||||| |||||
Sbjct: 61 cccatacttggtttcagtggctgcaagaat 90
>31562_oan-mir-551:mirbase
Length = 93
Score = 65.9 bits (33), Expect = 5e-12
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 18 gaaatcaagtgtgggtgagacctggtgcacagcgggaaggcgacccatacttggtttcag 77
||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 19 gaaatcaaggatgggtgagacctcttgcacaagtggaaggcgacccatacttggtttcag 78
Query: 78 aggct 82
||||
Sbjct: 79 gggct 83
>26542_tgu-mir-551:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 54 aaggcgacccatacttggtttcagaggctg 83
|||||||||||||||||||||||| |||||
Sbjct: 38 aaggcgacccatacttggtttcaggggctg 67
>26043_gga-mir-551:mirbase
Length = 113
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 aggcgacccatacttggtttcagaggctg 83
||||||||||||||||||||||| |||||
Sbjct: 64 aggcgacccatacttggtttcaggggctg 92
>27458_mdo-mir-551b:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 54 aaggcgacccatacttggtttcagaggct 82
|||||||||||||||||||||||| ||||
Sbjct: 43 aaggcgacccatacttggtttcaggggct 71
>25555_pma-mir-551:mirbase
Length = 75
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 aggcgacccatacttggtttca 76
||||||||||||||||||||||
Sbjct: 47 aggcgacccatacttggtttca 68
