miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00892;mir-551;ABRQ01321591.1/2376-2461 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 127 bits (64), Expect = 3e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 10 tggcccatgaaatcaagtgtgggtgagacctggtgcacagcgggaaggcgacccatactt 69
||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 7 tggcccatgaaatcaagcgtgggtgagacctggtgcaaaacaggaaggcgacccatactt 66
Query: 70 ggtttcagaggctgcgagaa 89
||||||||||||||||||||
Sbjct: 67 ggtttcagaggctgcgagaa 86
>RF00892;mir-551;AAKN02050963.1/24909-24994 10141:Cavia porcellus
(domestic guinea pig)
Length = 86
Score = 103 bits (52), Expect = 4e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 10 tggcccatgaaatcaagtgtgggtgagacctggtgcacagcgggaaggcgacccatactt 69
||||||| ||||||||| |||||||||||||||||| | |||||||||||||||||||
Sbjct: 7 tggcccaggaaatcaagcgtgggtgagacctggtgcggaaggggaaggcgacccatactt 66
Query: 70 ggtttcagaggctgcgagaa 89
||||||||||||||| ||||
Sbjct: 67 ggtttcagaggctgcaagaa 86
>RF00892;mir-551;AAQR01614836.1/887-972 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 93.7 bits (47), Expect = 4e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 11 ggcccatgaaatcaagtgtgggtgagacctggtgcacagcgggaaggcgacccatacttg 70
||||| |||||||||| ||||||||||||||||||| | | ||||||||||||| |||||
Sbjct: 8 ggcccgtgaaatcaagcgtgggtgagacctggtgcagaacaggaaggcgacccacacttg 67
Query: 71 gtttcagaggctgcgagaa 89
||||||| ||||| |||||
Sbjct: 68 gtttcaggggctgtgagaa 86
>RF00892;mir-551;AANN01687869.1/1924-1838 9365:Erinaceus europaeus
(western European hedgehog)
Length = 87
Score = 87.7 bits (44), Expect = 2e-17
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 ctctcctggcccatgaaatcaagtgtgggtgagacctggtgcacagc-gggaaggcgacc 62
||||||||||||||||||||||| ||||||||||||||| || | | | |||||||||
Sbjct: 1 ctctcctggcccatgaaatcaagcctgggtgagacctggtacagaacaagaaaggcgacc 60
Query: 63 catacttggtttcagaggct 82
||||||||||||||||||||
Sbjct: 61 catacttggtttcagaggct 80
>RF00892;mir-551;AAWZ01032406.1/96128-96215 28377:Anolis
carolinensis (green anole)
Length = 88
Score = 65.9 bits (33), Expect = 8e-11
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 18 gaaatcaagtgtgggtgagacctggtgcacag-cgggaaggcgacccatacttggtttca 76
||||||||| |||||||||||| ||| |||| | |||||||||||||||||||||||||
Sbjct: 16 gaaatcaaggttgggtgagacctcgtgaacagactggaaggcgacccatacttggtttca 75
Query: 77 g 77
|
Sbjct: 76 g 76
>RF00892;mir-551;AAFR03046841.1/43899-43813 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 54 aaggcgacccatacttggtttcagaggctgcgagaa 89
|||||||||||||||||||||||| |||| ||||||
Sbjct: 52 aaggcgacccatacttggtttcaggggcttcgagaa 87
>RF00892;mir-551;ABQF01023095.1/42853-42939 59729:Taeniopygia
guttata
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 54 aaggcgacccatacttggtttcagaggctg 83
|||||||||||||||||||||||| |||||
Sbjct: 52 aaggcgacccatacttggtttcaggggctg 81
>RF00892;mir-551;AADN02021036.1/52994-52908 9031:Gallus gallus
(chicken)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 55 aggcgacccatacttggtttcagaggctg 83
||||||||||||||||||||||| |||||
Sbjct: 53 aggcgacccatacttggtttcaggggctg 81
>RF00892;mir-551;AAVX01059360.1/184-266 7868:Callorhinchus milii
(ghost shark)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 ggaaggcgacccatacttggtttc 75
||||||||||||||||||||||||
Sbjct: 49 ggaaggcgacccatacttggtttc 72
