miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00987;mir-589;AAEX02011542.1/28051-28146 9615:Canis lupus
familiaris (dog)
Length = 96
Score = 143 bits (72), Expect = 3e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 ggctctgagaaccatgtctgatcagagctgggtactgcctgttcagaacagacaccggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 ggctctgagaaccatgtctgatcagagctgggtactgcctgttcagaacagacaccggtc 74
Query: 61 tctaagacgcag 72
||||||||||||
Sbjct: 75 tctaagacgcag 86
>RF00987;mir-589;AANU01170262.1/1936-1838 9544:Macaca mulatta
(rhesus monkey)
Length = 99
Score = 73.8 bits (37), Expect = 3e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 5 ctgagaaccatgtctgatcagagctgggtactgcctgttcagaacagac 53
|||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 23 ctgagaaccacgtctgctctgagctgggtactgcctgttcagaacagac 71
>RF00987;mir-589;AAQQ01679163.1/565-658 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 94
Score = 71.9 bits (36), Expect = 1e-12
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 8 agaaccatgtctgatcagagctgggtactgcctgttcagaacagacaccggt 59
||||||||||||| || ||||||||||||| |||||||||||| ||||||||
Sbjct: 20 agaaccatgtctgctctgagctgggtactgtctgttcagaacaaacaccggt 71
>RF00987;mir-589;AAQR01424360.1/1172-1073 30611:Otolemur garnettii
(small-eared galago)
Length = 100
Score = 63.9 bits (32), Expect = 2e-10
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 5 ctgagaaccatgtctgatcagagctgggtactgcctgttcagaacagacacc 56
|||||||| | ||||| || |||||||||||||||||||||||||| |||||
Sbjct: 23 ctgagaactacgtctgctctgagctgggtactgcctgttcagaacaaacacc 74
>RF00987;mir-589;AAWR02040352.1/25107-25204 9796:Equus caballus
(horse)
Length = 98
Score = 44.1 bits (22), Expect = 2e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 17 tctgatcagagctgggtactgcctgttcagaacagacaccggtctctaag 66
||||||| |||| ||| ||||||||||||||||| ||||| | |||||||
Sbjct: 34 tctgatcggagcgggg-actgcctgttcagaacaaacaccaggctctaag 82
