miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00928;mir-590;AAQQ01313324.1/3303-3207 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 97
Score = 91.7 bits (46), Expect = 9e-19
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 1 gagcttattcataaaagtacagtatgatccagtaaacctgtaattttatgtataagct 58
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 16 gagcttattcataaaagtacagtatcatccagtaagtctgtaattttatgtataagct 73
>RF00928;mir-590;AAPN01308740.1/1340-1245 9258:Ornithorhynchus
anatinus (platypus)
Length = 96
Score = 65.9 bits (33), Expect = 5e-11
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 gagcttattcataaaagtacagtatgatccagtaaacctgtaattttatgtataagctag 60
|||||||| |||||||||||||||| || |||||||||||| ||||||| |||||||||
Sbjct: 16 gagcttatccataaaagtacagtatcgtc-agtaaacctgtacttttatggataagctag 74
Query: 61 t 61
|
Sbjct: 75 t 75
>RF00928;mir-590;AAGV020627533.1/2369-2273 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 97
Score = 65.9 bits (33), Expect = 5e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 1 gagcttattcataaaagtacagtatgatccagtaaacctgtaattttatgtataagctag 60
|||| ||||||||||| |||||||| |||||| | ||||||||||||||||||| ||||
Sbjct: 16 gagcgtattcataaaattacagtataatccagctagcctgtaattttatgtataaactag 75
Query: 61 t 61
|
Sbjct: 76 t 76
>RF00928;mir-590;AANU01190949.1/13092-13188 9544:Macaca mulatta
(rhesus monkey)
Length = 97
Score = 60.0 bits (30), Expect = 3e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 1 gagcttattcataaaagtacagtatgatccagtaaacctgtaattttatgtataagct 58
|||||||||||||||||| ||||||| | ||| | |||||||||||||||||||||
Sbjct: 16 gagcttattcataaaagtgcagtatggtggagtcagtctgtaattttatgtataagct 73
>RF00928;mir-590;AAGW01523546.1/6054-5958 9986:Oryctolagus
cuniculus (rabbit)
Length = 97
Score = 52.0 bits (26), Expect = 7e-07
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 1 gagcttattcataaaagtacagtatgatccagtaaacctgtaattttatgtataagct 58
|||||||||||||||||| ||||| || || || | ||||| |||||||||||||||
Sbjct: 16 gagcttattcataaaagtgcagtacgagccggtgagcctgtcgttttatgtataagct 73
>RF00928;mir-590;AAPY01718744.1/4971-4879 37347:Tupaia belangeri
(northern tree shrew)
Length = 93
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gagcttattcataaaagtacagtat 25
|||||||||||||||||||||||||
Sbjct: 16 gagcttattcataaaagtacagtat 40
>RF00928;mir-590;AAGU02451779.1/3421-3513 9785:Loxodonta africana
(African savanna elephant)
Length = 93
Score = 46.1 bits (23), Expect = 5e-05
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 11 ataaaagtacagtatgatccagtaaacctgtaattttatgtataagctagt 61
||||||||| ||||| |||| |||||||| ||||||||||||| |||||
Sbjct: 22 ataaaagtatagtataatcctacaaacctgtgattttatgtataaactagt 72
