miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00877;mir-592;ABRQ01197780.1/1278-1365 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 135 bits (68), Expect = 1e-31
Identities = 84/88 (95%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 4 tattatgccatgacattgtgtcaatatgcgatgatgtgt-gtgatggcacagcgtcatca 62
|||||||| ||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 1 tattatgctatgacgttgtgtcaatatgcgatgatgtgttgtgatggcgcagcgtcatca 60
Query: 63 cgtggtgacgcaacatcatgacgtaaga 90
||||||||||||||||||||||||||||
Sbjct: 61 cgtggtgacgcaacatcatgacgtaaga 88
>RF00877;mir-592;AAQQ01768898.1/161-74 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 88
Score = 103 bits (52), Expect = 4e-22
Identities = 80/88 (90%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 4 tattatgccatgacattgtgtcaatatgcgatga-tgtgtgtgatggcacagcgtcatca 62
||||||||||||||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 1 tattatgccatgacattgtgtcagaatgcgatgactggttgcgatggcacagcgtcatca 60
Query: 63 cgtggtgacgcaacatcatgacgtaaga 90
||||| ||||||||||||||||| ||||
Sbjct: 61 cgtggagacgcaacatcatgacgaaaga 88
>RF00877;mir-592;AAPN01131115.1/15145-15229 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 4 tattatgccatgacattgtgtcaatatgcgatgatgtgtgtgatggcacagcgtcatcac 63
|||||||||| ||| ||||||| |||| |||| ||| |||||||||||||| |||||||
Sbjct: 1 tattatgccacaacactgtgtcactatgtgatg-tgt-tgtgatggcacagcctcatcac 58
Query: 64 gtggtgacgcaacatcatgac 84
| || | |||||||||||||
Sbjct: 59 atagtaatgcaacatcatgac 79
