miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00991;mir-599;ABRQ01087343.1/1788-1694 9813:Procavia capensis
(cape rock hyrax)
Length = 95
Score = 151 bits (76), Expect = 2e-36
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 8 tgctgtccacagtgtgtttgataagctgacatgggacagggattcttttcactgttgtgt 67
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 8 tgctgtccacagtgtgtttgataagctgacatgggacaggatttcttttcactgttgtgt 67
Query: 68 cagtttatcaaacccatacctgga 91
||||||||||||||||||||||||
Sbjct: 68 cagtttatcaaacccatacctgga 91
>RF00991;mir-599;AAQQ01055001.1/924-830 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 95
Score = 145 bits (73), Expect = 1e-34
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 19 gtgtgtttgataagctgacatgggacagggattcttttcactgttgtgtcagtttatcaa 78
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 19 gtgtgtttgataagctgacatgggacagagattcttttcactgttgtgtcagtttatcaa 78
Query: 79 acccatacctggatgac 95
|||||||||||||||||
Sbjct: 79 acccatacctggatgac 95
>RF00991;mir-599;AAFR03006570.1/12574-12668 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 95
Score = 133 bits (67), Expect = 4e-31
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 10 ctgtccacagtgtgtttgataagctgacatgggacagggattcttttcactgttgtgtca 69
||||||| |||||||||||||| |||||||||||||| | ||||||||||||||||||||
Sbjct: 10 ctgtccagagtgtgtttgataatctgacatgggacagaggttcttttcactgttgtgtca 69
Query: 70 gtttatcaaacccatacctggat 92
|||||||||||||||||||||||
Sbjct: 70 gtttatcaaacccatacctggat 92
>RF00991;mir-599;AAPY01575258.1/7264-7170 37347:Tupaia belangeri
(northern tree shrew)
Length = 95
Score = 125 bits (63), Expect = 1e-28
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 8 tgctgtccacagtgtgtttgataagctgacatgggacagggattcttttcactgttgtgt 67
|||| |||||| ||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 8 tgctatccacaatgtgtttgataagctgatataggacagggatttttttcactgttgtgt 67
Query: 68 cagtttatcaaacccatacctggatga 94
|||||||||||||||||| ||||||||
Sbjct: 68 cagtttatcaaacccatatctggatga 94
>RF00991;mir-599;ABRO01008573.1/6484-6390 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 95
Score = 105 bits (53), Expect = 1e-22
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 5 acctgctgtccacagtgtgtttgataagctgacatgggacagggattcttttcactgttg 64
|||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5 acctgctgtccatagcatgtttgataagctgacatgggacaggggttcttttcactgtta 64
Query: 65 tgtcagtttatcaaacccatacctg 89
|||||||||||| ||||||||||
Sbjct: 65 catcagtttatcaagcccatacctg 89
>RF00991;mir-599;AC121598.3/75982-76076 10090:Mus musculus (house
mouse)
Length = 95
Score = 95.6 bits (48), Expect = 1e-19
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 8 tgctgtccacagtgtgtttgataagctgacatgggacagggattcttttcactgttgtgt 67
||||||||||||||| ||||||||| |||||| ||| ||| | | |||||| ||||||
Sbjct: 8 tgctgtccacagtgtatttgataagatgacataggagaggaacttctttcacctttgtgt 67
Query: 68 cagtttatcaaacccatacctggatgac 95
||||||||||||||||||||||||||||
Sbjct: 68 cagtttatcaaacccatacctggatgac 95
>RF00991;mir-599;AAPN01034672.1/28470-28563 9258:Ornithorhynchus
anatinus (platypus)
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 10 ctgtccacagtgtgtttgataagctgacatgggacagg-gattcttttcactgttgtgtc 68
|||||| ||||| |||||||||||| ||||| |||||| | || ||||||| ||||||||
Sbjct: 8 ctgtcctcagtgcgtttgataagctaacatgagacaggagctttttttcacggttgtgtc 67
Query: 69 agtttatca 77
||| |||||
Sbjct: 68 agtgtatca 76
