miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33434_bta-mir-615:mirbase
Length = 93
Score = 139 bits (70), Expect = 4e-34
Identities = 83/86 (96%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tcgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggt 59
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 2 tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 61
Query: 60 ccgagcccgggtctccctctcccccc 85
||||||| ||||||||||||||||||
Sbjct: 62 ccgagcctgggtctccctctcccccc 87
>27242_eca-mir-615:mirbase
Length = 97
Score = 137 bits (69), Expect = 1e-33
Identities = 82/85 (96%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 2 cgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggtc 60
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 4 cgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggtc 63
Query: 61 cgagcccgggtctccctctcccccc 85
|||||| ||||||||||||||||||
Sbjct: 64 cgagcctgggtctccctctcccccc 88
>27243_eca-mir-615:mirbase
Length = 97
Score = 137 bits (69), Expect = 1e-33
Identities = 82/85 (96%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 2 cgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggtc 60
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 4 cgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggtc 63
Query: 61 cgagcccgggtctccctctcccccc 85
|||||| ||||||||||||||||||
Sbjct: 64 cgagcctgggtctccctctcccccc 88
>28930_hsa-mir-615:mirbase
Length = 96
Score = 131 bits (66), Expect = 9e-32
Identities = 82/86 (95%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tcgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggt 59
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 2 tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 61
Query: 60 ccgagcccgggtctccctctcccccc 85
||||||| |||||||||||| |||||
Sbjct: 62 ccgagcctgggtctccctcttccccc 87
>28931_hsa-mir-615:mirbase
Length = 96
Score = 131 bits (66), Expect = 9e-32
Identities = 82/86 (95%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tcgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggt 59
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 2 tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 61
Query: 60 ccgagcccgggtctccctctcccccc 85
||||||| |||||||||||| |||||
Sbjct: 62 ccgagcctgggtctccctcttccccc 87
>30545_ptr-mir-615:mirbase
Length = 95
Score = 131 bits (66), Expect = 9e-32
Identities = 82/86 (95%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tcgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggt 59
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 2 tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 61
Query: 60 ccgagcccgggtctccctctcccccc 85
||||||| |||||||||||| |||||
Sbjct: 62 ccgagcctgggtctccctcttccccc 87
>32224_mmu-mir-615:mirbase
Length = 92
Score = 131 bits (66), Expect = 9e-32
Identities = 82/86 (95%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tcgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggt 59
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 1 tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
Query: 60 ccgagcccgggtctccctctcccccc 85
||||||| |||||||||||| |||||
Sbjct: 61 ccgagcctgggtctccctcttccccc 86
>32225_mmu-mir-615:mirbase
Length = 92
Score = 131 bits (66), Expect = 9e-32
Identities = 82/86 (95%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tcgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggt 59
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 1 tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
Query: 60 ccgagcccgggtctccctctcccccc 85
||||||| |||||||||||| |||||
Sbjct: 61 ccgagcctgggtctccctcttccccc 86
>32963_rno-mir-615:mirbase
Length = 92
Score = 131 bits (66), Expect = 9e-32
Identities = 82/86 (95%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tcgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggt 59
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 1 tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
Query: 60 ccgagcccgggtctccctctcccccc 85
||||||| |||||||||||| |||||
Sbjct: 61 ccgagcctgggtctccctcttccccc 86
>34124_ssc-mir-615:mirbase
Length = 88
Score = 127 bits (64), Expect = 1e-30
Identities = 80/84 (95%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 3 gggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggtcc 61
|||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 1 gggaggggcgggagggggctccccggtgctcggatctcgagggtgcttattgttcggtcc 60
Query: 62 gagcccgggtctccctctcccccc 85
||||| ||||||||||||||||||
Sbjct: 61 gagcctgggtctccctctcccccc 84
>28054_mml-mir-615:mirbase
Length = 96
Score = 123 bits (62), Expect = 2e-29
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tcgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggt 59
||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 2 tcgggaggggcggaaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 61
Query: 60 ccgagcccgggtctccctctcccccc 85
||||||| |||||||||||| |||||
Sbjct: 62 ccgagcctgggtctccctcttccccc 87
>28055_mml-mir-615:mirbase
Length = 96
Score = 123 bits (62), Expect = 2e-29
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tcgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggt 59
||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 2 tcgggaggggcggaaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 61
Query: 60 ccgagcccgggtctccctctcccccc 85
||||||| |||||||||||| |||||
Sbjct: 62 ccgagcctgggtctccctcttccccc 87
>31193_ppy-mir-615:mirbase
Length = 96
Score = 115 bits (58), Expect = 5e-27
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tcgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggt 59
|||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct: 2 tcgggaggggcgggagggggttccccggtgctcggatctcgagggtgcttattgttcggt 61
Query: 60 ccgagcccgggtctccctctcccccc 85
||||||| |||||||| ||| |||||
Sbjct: 62 ccgagcctgggtctccgtcttccccc 87
>31194_ppy-mir-615:mirbase
Length = 96
Score = 115 bits (58), Expect = 5e-27
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tcgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggt 59
|||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct: 2 tcgggaggggcgggagggggttccccggtgctcggatctcgagggtgcttattgttcggt 61
Query: 60 ccgagcccgggtctccctctcccccc 85
||||||| |||||||| ||| |||||
Sbjct: 62 ccgagcctgggtctccgtcttccccc 87
