miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00879;mir-615;ABRQ01001814.1/3563-3468 9813:Procavia capensis
(cape rock hyrax)
Length = 96
Score = 139 bits (70), Expect = 6e-33
Identities = 83/86 (96%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 tcgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggt 59
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 2 tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 61
Query: 60 ccgagcccgggtctccctctcccccc 85
||||||| ||||||||||||||||||
Sbjct: 62 ccgagcctgggtctccctctcccccc 87
>RF00879;mir-615;AAYZ01058781.1/113-208 9978:Ochotona princeps
(American pika)
Length = 96
Score = 71.9 bits (36), Expect = 1e-12
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 tcgggaggggcgggaggggggtccccggagctcgg-tctcgagggtgcttattgttcggt 59
|||||||||||||||||||||||||||| || ||| |||||||||||| |||||||
Sbjct: 2 tcgggaggggcgggaggggggtccccggtgcccggacctcgagggtgctggccgttcggt 61
Query: 60 ccgagcccgggtctccctct 79
||||||| ||||||| ||||
Sbjct: 62 ccgagcctgggtctcactct 81
>RF00879;mir-615;AANN01223825.1/45-138 9365:Erinaceus europaeus
(western European hedgehog)
Length = 94
Score = 54.0 bits (27), Expect = 3e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 36 tctcgagggtgcttattgttcggtccgagcccgggtctccctctccc 82
||||||||||||| |||||||||| ||||| ||||||||| |||||
Sbjct: 38 tctcgagggtgctcattgttcggtttgagcctgggtctcccactccc 84
