miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01010;mir-632;ABRT010518505.1/461-367 9478:Tarsius syrichta
(Philippine tarsier)
Length = 95
Score = 113 bits (57), Expect = 4e-25
Identities = 73/77 (94%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 9 gccgcagtgcctgacgggag-cagagcggcgaacgagggcgtcggccattttgtgtctgt 67
|||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |||||
Sbjct: 9 gccgcagtgcctgacgggaggcggagcggcgaacgaggccgtcggccattttgtatctgt 68
Query: 68 ttcctgtgggacgcggt 84
|||||||||||||||||
Sbjct: 69 ttcctgtgggacgcggt 85
>RF01010;mir-632;AAGW01337624.1/6490-6583 9986:Oryctolagus
cuniculus (rabbit)
Length = 94
Score = 113 bits (57), Expect = 4e-25
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 cgcctccggccgcagtgcctgacgggag-cagagcggcgaacgagggcgtcggccatttt 59
||||||| ||||||||||| |||||||| | |||| ||||||||||| ||||||||||||
Sbjct: 1 cgcctcccgccgcagtgcccgacgggaggcggagccgcgaacgagggtgtcggccatttt 60
Query: 60 gtgtctgtttcctgtgggacgcggt 84
|||||||||||||||||||||||||
Sbjct: 61 gtgtctgtttcctgtgggacgcggt 85
>RF01010;mir-632;ABRN01144145.1/262-169 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 94
Score = 103 bits (52), Expect = 4e-22
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 cgcctccggccgcagtgcctgacgggag-cagagcggcgaacgagggcgtcggccatttt 59
|||| ||||||||||||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct: 1 cgcccccggccgcagtgcctgacgggaggcagagcagcgagcgagggcgtcggccatttt 60
Query: 60 gtgtctgtttcctgtgggac 79
||| |||| |||||||||||
Sbjct: 61 gtggctgtatcctgtgggac 80
>RF01010;mir-632;CABD01178489.1/2798-2705 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 94
Score = 97.6 bits (49), Expect = 3e-20
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 cgcctccggccgcagtgcctgacgggag-cagagcggcgaacgagggcgtcggccatttt 59
||||||| ||||||||| ||||||||| | |||||| |||||||| |||||||||||||
Sbjct: 1 cgcctcctaccgcagtgcttgacgggaggcggagcggggaacgaggccgtcggccatttt 60
Query: 60 gtgtctgtttcctgtgggacgcggt 84
||||||| |||||||||||||||||
Sbjct: 61 gtgtctgcttcctgtgggacgcggt 85
>RF01010;mir-632;AAGV020133793.1/2039-1946 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 94
Score = 91.7 bits (46), Expect = 2e-18
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 cgcctccggccgcagtgcctgacgggag-cagagcggcgaacgagggcgtcggccatttt 59
|||||| ||||||||||||||||||||| | ||| |||||| ||| ||| ||||||||
Sbjct: 1 cgcctctggccgcagtgcctgacgggaggcggagaggcgaaagagactgtccgccatttt 60
Query: 60 gtgtctgtttcctgtgggacgcggtc 85
||||||||||||||||||||||||||
Sbjct: 61 gtgtctgtttcctgtgggacgcggtc 86
>RF01010;mir-632;AAGU02628656.1/415-322 9785:Loxodonta africana
(African savanna elephant)
Length = 94
Score = 91.7 bits (46), Expect = 2e-18
Identities = 83/94 (88%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 1 cgcctccggccgcagtgcctgacggga-gcagagcggcgaacgagggcgtcggccatttt 59
|||| ||||||||||||| ||| |||| | ||||||| ||||||| |||||||||||||
Sbjct: 1 cgcccccggccgcagtgcatgatgggaagtggagcggctaacgaggccgtcggccatttt 60
Query: 60 gtgtctgtttcctgtgggacgcggtcgtggccgt 93
||||||||||||||||||||| ||| || |||||
Sbjct: 61 gtgtctgtttcctgtgggacgtggtggtagccgt 94
>RF01010;mir-632;AAYZ01474155.1/733-640 9978:Ochotona princeps
(American pika)
Length = 94
Score = 85.7 bits (43), Expect = 1e-16
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 31 gagcggcgaacgagggcgtcggccattttgtgtctgtttcctgtgggacgcggtcgtggc 90
|||| ||||||||||| |||||||||||||||||||||||||| |||||||||| || ||
Sbjct: 32 gagccgcgaacgagggtgtcggccattttgtgtctgtttcctgagggacgcggtggtagc 91
Query: 91 cgt 93
|||
Sbjct: 92 cgt 94
>RF01010;mir-632;ABVD01081068.1/369-276 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 94
Score = 83.8 bits (42), Expect = 4e-16
Identities = 82/94 (87%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 1 cgcctccggccgcagtgcctgacgggagcag-agcggcgaacgagggcgtcggccatttt 59
|||||| |||||||||||||| |||||| | ||| ||||| ||| ||||||||||||
Sbjct: 1 cgcctctggccgcagtgcctgtcgggaggtggagcaacgaaccaggctgtcggccatttt 60
Query: 60 gtgtctgtttcctgtgggacgcggtcgtggccgt 93
|||||||||||||||| ||||||||||| |||||
Sbjct: 61 gtgtctgtttcctgtgagacgcggtcgtagccgt 94
>RF01010;mir-632;AAKN02033149.1/3386-3291 10141:Cavia porcellus
(domestic guinea pig)
Length = 96
Score = 79.8 bits (40), Expect = 6e-15
Identities = 72/80 (90%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 1 cgcctccggccgcagtgcctgacgggag-cagagcggcgaacgagggcgtcggccatttt 59
||||||| |||||||||||| |||||| | ||||| | |||||||||||||||||||||
Sbjct: 1 cgcctcccgccgcagtgcctatcgggaggcggagcg-caaacgagggcgtcggccatttt 59
Query: 60 gtgtctgtttcctgtgggac 79
||||||| ||||||||||||
Sbjct: 60 gtgtctgcttcctgtgggac 79
>RF01010;mir-632;AANN01619229.1/133-226 9365:Erinaceus europaeus
(western European hedgehog)
Length = 94
Score = 75.8 bits (38), Expect = 9e-14
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 30 agagcggcgaacgagggcgtcggccattttgtgtctgtttcctgtgggacgcgg 83
|||||| |||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct: 31 agagcgccgaacgggagcgtcggccattttgtgcctgtttcctgtgggacgcgg 84
>RF01010;mir-632;AL591146.21/50773-50865 10090:Mus musculus (house
mouse)
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 38 gaacgagggcgtcggccattttgtgtctgtttcctgtgggacgcg 82
||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 38 gaacgagggtgtcggccattttgtgtctgtttcctgcgggacgcg 82
>RF01010;mir-632;AALT01115250.1/29-124 42254:Sorex araneus
(European shrew)
Length = 96
Score = 60.0 bits (30), Expect = 6e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 28 gcagagcggcgaacgagggcgtcggccattttgtgtctgtttcctgtggg 77
|||||||| ||| |||||| |||||| ||||||||||||||||||||||
Sbjct: 30 gcagagcgccgagcgagggtgtcggcttttttgtgtctgtttcctgtggg 79
>RF01010;mir-632;ABRQ01763187.1/1091-999 9813:Procavia capensis
(cape rock hyrax)
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 31 gagcggcgaacgagggcgtcggccattttgtgtctgtttcctgtgggacg 80
||||||| | ||||| |||||||||||||||| |||||||||| ||||||
Sbjct: 31 gagcggctagcgaggccgtcggccattttgtgcctgtttcctgcgggacg 80
>RF01010;mir-632;AAFR03044718.1/61849-61755 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/35 (94%), Gaps = 2/35 (5%)
Strand = Plus / Plus
Query: 49 tcggccattttgtgtctgtttcctgtgggacgcgg 83
|||||||||||||||| |||||||||||||||||
Sbjct: 53 tcggccattttgtgtc--tttcctgtgggacgcgg 85
>RF01010;mir-632;AAFC03041127.1/32665-32729 9913:Bos taurus
(cattle)
Length = 65
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 45 ggcgtcggccattttgtgtctgtttcctgtgggac 79
||||| |||||||||||| |||||||||||||||
Sbjct: 31 ggcgttggccattttgtggatgtttcctgtgggac 65
