miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00872;mir-652;ABRQ01225516.1/4631-4728 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 117 bits (59), Expect = 2e-26
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 1 acaaccctaggagagggtgccattcacatagactataattgaatggcgccactagggttg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 20 acaaccctaggagagggtgccattcacatagactgtaattgaatggcgccactagggttg 79
Query: 61 tgc 63
|||
Sbjct: 80 tgc 82
>RF00872;mir-652;AALT01529428.1/6713-6810 42254:Sorex araneus
(European shrew)
Length = 98
Score = 109 bits (55), Expect = 4e-24
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 1 acaaccctaggagagggtgccattcacatagactataattgaatggcgccactagggttg 60
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 acaaccctagtagatggtgccattcacatagactataattgaatggcgccactagggttg 79
Query: 61 tgc 63
|||
Sbjct: 80 tgc 82
>RF00872;mir-652;ABRP01145045.1/4347-4444 132908:Pteropus vampyrus
(large flying fox)
Length = 98
Score = 93.7 bits (47), Expect = 2e-19
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 1 acaaccctaggagagggtgccattcacatagactataattgaatggcgccactagggttg 60
|||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 20 acaaccctaggaatgtgtgccattcacatagactaaaattgaatggcgccactagggttg 79
Query: 61 tgc 63
|||
Sbjct: 80 tgc 82
>RF00872;mir-652;ABDC01033470.1/371-467 30608:Microcebus murinus
(gray mouse lemur)
Length = 97
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 gccattcacatagactataat 39
|||||||||||||||||||||
Sbjct: 35 gccattcacatagactataat 55
>RF00872;mir-652;AANU01122335.1/22146-22050 9544:Macaca mulatta
(rhesus monkey)
Length = 97
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 agagggtgccattcacatagactat 36
||||||| |||||||||||||||||
Sbjct: 28 agagggtaccattcacatagactat 52
