miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00937;mir-653;AAWR02013812.1/75511-75414 9796:Equus caballus
(horse)
Length = 98
Score = 143 bits (72), Expect = 4e-34
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactgga 60
|||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct: 2 tcattccttcagtgttgaaacaatctctgctgaaccaggctccaaactacgttcactgga 61
Query: 61 gtttgtttcaatattgcaagaatgataa 88
||||||||||||||||||||||||||||
Sbjct: 62 gtttgtttcaatattgcaagaatgataa 89
>RF00937;mir-653;AAKN02016831.1/11044-10947 10141:Cavia porcellus
(domestic guinea pig)
Length = 98
Score = 143 bits (72), Expect = 4e-34
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 4 ttccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactggagtt 63
||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct: 5 ttccttcagtgttgaaacactctctactgaaccaggctccacaccaagttcactggagtt 64
Query: 64 tgtttcaatattgcaagaatgataagat 91
||||||| ||||||||||||||||||||
Sbjct: 65 tgtttcagtattgcaagaatgataagat 92
>RF00937;mir-653;AANN01380427.1/400-497 9365:Erinaceus europaeus
(western European hedgehog)
Length = 98
Score = 135 bits (68), Expect = 1e-31
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactgga 60
|||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||
Sbjct: 2 tcattccttcagtgttgaaacattctcagctgaaccagactccaaaccaagttcactgga 61
Query: 61 gtttgtttcaatattgcaagaatgataa 88
||||||||||||||||||||||||||||
Sbjct: 62 gtttgtttcaatattgcaagaatgataa 89
>RF00937;mir-653;ABRP01072941.1/3876-3780 132908:Pteropus vampyrus
(large flying fox)
Length = 97
Score = 133 bits (67), Expect = 4e-31
Identities = 86/91 (94%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactgga 60
|||||||||||||| |||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 2 tcattccttcagtgctgaaacaatctctactgaacc-ggctccaaacaaagttcactgga 60
Query: 61 gtttgtttcaatattgcaagaatgataagat 91
| |||||||||||||||||||||||||||||
Sbjct: 61 gattgtttcaatattgcaagaatgataagat 91
>RF00937;mir-653;ABRO01064908.1/1765-1668 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 98
Score = 133 bits (67), Expect = 4e-31
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactgga 60
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 2 tcattccttcagtgttaaagcaatctctattgaaccaagctccaaaccaagttcattgga 61
Query: 61 gtttgtttcaatattgcaagaat 83
|||||||||||||||||||||||
Sbjct: 62 gtttgtttcaatattgcaagaat 84
>RF00937;mir-653;ABRT010247111.1/6369-6272 9478:Tarsius syrichta
(Philippine tarsier)
Length = 98
Score = 131 bits (66), Expect = 2e-30
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactgga 60
||||||||||||||||||||||| ||||| |||||||| || |||| ||||||||||||
Sbjct: 2 tcattccttcagtgttgaaacaaactctactgaaccagacttcaaatgaagttcactgga 61
Query: 61 gtttgtttcaatattgcaagaatgataaga 90
||||||||||||||||||||||||||||||
Sbjct: 62 gtttgtttcaatattgcaagaatgataaga 91
>RF00937;mir-653;AAGW01691909.1/116-19 9986:Oryctolagus cuniculus
(rabbit)
Length = 98
Score = 115 bits (58), Expect = 1e-25
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 2 cattccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactggag 61
||||| ||||||||||||||| |||||||||| ||||| |||||||||||||||||
Sbjct: 3 cattctttcagtgttgaaacatcctctattgaattaggctttcaaccaagttcactggag 62
Query: 62 tttgtttcaatattgcaagaatgataagat 91
||||||||||||||||||||||||||||||
Sbjct: 63 tttgtttcaatattgcaagaatgataagat 92
>RF00937;mir-653;AC161368.2/145297-145394 10090:Mus musculus
(house mouse)
Length = 98
Score = 107 bits (54), Expect = 2e-23
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactgga 60
|||||| |||||||||||||||||||||| ||||||| |||||||| | |||||||||||
Sbjct: 2 tcattctttcagtgttgaaacaatctctactgaaccaagctccaaagcgagttcactgga 61
Query: 61 gtttgtttcaatattgca 78
|||||||||| |||||||
Sbjct: 62 gtttgtttcagtattgca 79
>RF00937;mir-653;AALT01658113.1/578-675 42254:Sorex araneus
(European shrew)
Length = 98
Score = 105 bits (53), Expect = 1e-22
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 8 ttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactggagtttgtt 67
||||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||
Sbjct: 9 ttcagtgttgaaacaatctctgctgaaccagactgcaaatcaagttcactggagtttgtt 68
Query: 68 tcaatattgcaagaatg 84
||||||||| |||||||
Sbjct: 69 tcaatattggaagaatg 85
>RF00937;mir-653;AAQR01063642.1/1854-1758 30611:Otolemur garnettii
(small-eared galago)
Length = 97
Score = 101 bits (51), Expect = 1e-21
Identities = 82/91 (90%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactgga 60
||||||||||||||||||||||||||||| ||||| ||||| |||| || |||||||||
Sbjct: 2 tcattccttcagtgttgaaacaatctctactgaacaaggcttcaaagtaa-ttcactgga 60
Query: 61 gtttgtttcaatattgcaagaatgataagat 91
|||||||||||||||||| || || ||||||
Sbjct: 61 gtttgtttcaatattgcaggactggtaagat 91
>RF00937;mir-653;ABRR01013946.1/4018-3924 30538:Lama pacos
(alpaca)
Length = 95
Score = 97.6 bits (49), Expect = 2e-20
Identities = 81/91 (89%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactgga 60
||||||| |||||||||||||||||||| |||||||| || || ||||||||||||
Sbjct: 2 tcattccctcagtgttgaaacaatctctgctgaaccagattctaa---aagttcactgga 58
Query: 61 gtttgtttcaatattgcaagaatgataagat 91
||||||||||| |||||||||||||||||||
Sbjct: 59 gtttgtttcaacattgcaagaatgataagat 89
>RF00937;mir-653;AAFC03096979.1/9216-9311 9913:Bos taurus (cattle)
Length = 96
Score = 79.8 bits (40), Expect = 5e-15
Identities = 79/91 (86%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactgga 60
||||||| |||||||||||||||||||| |||||||| | | || ||||||||||||
Sbjct: 2 tcattccctcagtgttgaaacaatctctgttgaaccatgttacagg--aagttcactgga 59
Query: 61 gtttgtttcaatattgcaagaatgataagat 91
||||||||||| |||| | ||||||||||||
Sbjct: 60 gtttgtttcaacattggaggaatgataagat 90
>RF00937;mir-653;ABVD01342338.1/2080-1983 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 98
Score = 58.0 bits (29), Expect = 2e-08
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactgga 60
||||||||||||||||| |||||||||| ||| | | | |||| ||| ||||||| ||
Sbjct: 2 tcattccttcagtgttggaacaatctctggtgagctaagtaccaagccatgttcactaga 61
Query: 61 gtttgtttcaatattgcaagaatgataag 89
||||||||| | | || ||||||||||||
Sbjct: 62 gtttgtttctacactgtaagaatgataag 90
>RF00937;mir-653;AAGV020669408.1/1391-1294 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 98
Score = 54.0 bits (27), Expect = 3e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactgga 60
||||| |||||||||||||||||||||| ||| | | | |||| || ||||||||||
Sbjct: 2 tcatttcttcagtgttgaaacaatctctggtgagctaagtcccaagtcatgttcactgga 61
Query: 61 gtttgtttcaa 71
|||||||||||
Sbjct: 62 gtttgtttcaa 72
>RF00937;mir-653;ABRN01117807.1/19679-19585 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 74/88 (84%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 4 ttccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactggagtt 63
|||| |||||||||||||||||||| ||||||||| | | | ||||||||||||| |
Sbjct: 5 ttccctcagtgttgaaacaatctctgctgaaccaggtt--acaggaagttcactggag-t 61
Query: 64 tgtttcaatattgcaagaatgataagat 91
|||||||| |||| | ||| ||||||||
Sbjct: 62 tgtttcaacattggaggaacgataagat 89
>RF00937;mir-653;AAGU02116871.1/849-753 9785:Loxodonta africana
(African savanna elephant)
Length = 97
Score = 50.1 bits (25), Expect = 5e-06
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 3 attccttcagtgttgaaacaatctctattgaaccaggctccaaaccaagttcactggagt 62
||||||||||| ||||||||| ||||| | || |||| ||||| | ||||||||||||
Sbjct: 4 attccttcagtattgaaacaagctctagttaatcaggtcccaaaaaaggttcactggagt 63
Query: 63 ttgtt 67
|||||
Sbjct: 64 ttgtt 68
>RF00937;mir-653;AAIY01698590.1/703-798 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 96
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 tcattccttcagtgttgaaacaatctctattgaaccagg 39
||||||||||||| |||||||| |||||| | |||||||
Sbjct: 2 tcattccttcagtattgaaacagtctctagttaaccagg 40
