miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00340;SNORA36;ABDC01299701.1/1392-1522 30608:Microcebus murinus
(gray mouse lemur)
Length = 131
Score = 67.9 bits (34), Expect = 1e-11
Identities = 47/50 (94%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 12 aaatgattggataaaaaatattattctattcatttatctcccagcctaca 61
||||||||||||| ||||||||| |||||||||||||| |||||||||||
Sbjct: 80 aaatgattggatagaaaatattactctattcatttatc-cccagcctaca 128
>RF00340;SNORA36;AAKN02019180.1/128364-128494 10141:Cavia porcellus
(domestic guinea pig)
Length = 131
Score = 65.9 bits (33), Expect = 5e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 11 aaaatgattggataaaaaatattattctattcatttatctc 51
|||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 79 aaaatgattggatagaaaatgttattctattcatttatctc 119
>RF00340;SNORA36;ABVD01199245.1/1451-1320 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 132
Score = 61.9 bits (31), Expect = 8e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 3 ggctaggaaaaatgattggataaaaaatattattctattcatttatctcccagcctaca 61
||||||| ||||||||||||| ||||||||||||| | ||||| |||| |||||||||
Sbjct: 71 ggctaggggaaatgattggatagaaaatattattctgtccatttgtctctcagcctaca 129
>RF00340;SNORA36;AC188648.11/111060-110940 9615:Canis lupus
familiaris (dog)
Length = 121
Score = 60.0 bits (30), Expect = 3e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 28 aatattattctattcatttatctcccagcctaca 61
||||||| ||||||||||||||||||||||||||
Sbjct: 85 aatattactctattcatttatctcccagcctaca 118
>RF00340;SNORA36;CABD01065828.1/6971-6850 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 122
Score = 58.0 bits (29), Expect = 1e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 1 tgggctaggaaaaatgattggataaaaaatattattctattcatttatctcccagcctac 60
||||||| || | |||||||| || ||| ||||||||||||||||| ||||||||||||
Sbjct: 59 tgggctaagagagatgattgggtagaaagtattattctattcatttgcctcccagcctac 118
Query: 61 a 61
|
Sbjct: 119 a 119
>RF00340;SNORA36;AAGU02530612.1/4787-4918 9785:Loxodonta africana
(African savanna elephant)
Length = 132
Score = 56.0 bits (28), Expect = 5e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 2 gggctaggaaaaatgattggataaaaaatattattctattcatttatctcccagcctaca 61
|||||||| ||||||| |||||| |||| ||| | ||||||||||| ||||||||||||
Sbjct: 70 gggctagggaaaatgaatggatagaaaacatttctttattcatttatttcccagcctaca 129
>RF00340;SNORA36;ABRP01297130.1/1518-1622 132908:Pteropus vampyrus
(large flying fox)
Length = 105
Score = 54.0 bits (27), Expect = 2e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 10 aaaaatgattggataaaaaatattattctattcatttatctcc 52
|||||| |||||||| |||||||| |||||||||||||||||
Sbjct: 49 aaaaataattggataggaaatattactctattcatttatctcc 91
>RF00340;SNORA36;AAHX01095142.1/71787-71884 10116:Rattus
norvegicus (Norway rat)
Length = 98
Score = 54.0 bits (27), Expect = 2e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 11 aaaatgattggataaaaaatattattctattcatttatctcccagcctaca 61
|||| ||||||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 45 aaaaagattggatagaaaacattattctattcatttactccccagcctaca 95
>RF00340;SNORA36;AC158963.3/185991-186122 10090:Mus musculus (house
mouse)
Length = 132
Score = 54.0 bits (27), Expect = 2e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 11 aaaatgattggataaaaaatattattctattcatttatctcccagcctaca 61
||||||| |||||| |||| ||||||||||||||||| |||||||||||
Sbjct: 79 aaaatgactggatagaaaacattattctattcatttactccccagcctaca 129
>RF00340;SNORA36;AAGW01325785.1/1194-1323 9986:Oryctolagus cuniculus
(rabbit)
Length = 130
Score = 54.0 bits (27), Expect = 2e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 3 ggctaggaaaaatgattggataaaaaatattattctattcatttatctcccagcctaca 61
||||||| ||||| || ||||| ||||| ||||||||||||| |||| |||||||||||
Sbjct: 70 ggctagggaaaatcatcggatagaaaatgttattctattcatatatc-cccagcctaca 127
>RF00340;SNORA36;AAYZ01558510.1/1099-965 9978:Ochotona princeps
(American pika)
Length = 135
Score = 52.0 bits (26), Expect = 7e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 28 aatattattctattcatttatctcccagcctaca 61
||||| |||||||||| |||||||||||||||||
Sbjct: 99 aatatcattctattcacttatctcccagcctaca 132
>RF00340;SNORA36;AAPE01499728.1/230-104 59463:Myotis lucifugus
(little brown bat)
Length = 127
Score = 50.1 bits (25), Expect = 3e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 14 atgattggataaaaaatattattctattcatttatctcccagcct 58
||||||||||| |||| ||| |||||||||||| ||||||||||
Sbjct: 77 atgattggatagaaaacattgctctattcatttacctcccagcct 121
>RF00340;SNORA36;AAKN02004756.1/29029-28904 10141:Cavia porcellus
(domestic guinea pig)
Length = 126
Score = 50.1 bits (25), Expect = 3e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 13 aatgattggataaaaaatattattctattcatttatc 49
|||| ||||||| ||||| ||||||||||||||||||
Sbjct: 77 aatgtttggatagaaaatgttattctattcatttatc 113
>RF00340;SNORA36;AAPE01421970.1/734-602 59463:Myotis lucifugus
(little brown bat)
Length = 133
Score = 48.1 bits (24), Expect = 1e-05
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 3 ggctaggaaaaatgattggata-aaaaatattattctattcatttatctcccagcctaca 61
|||||||| |||||| ||| || |||||| | | |||||||| |||||||||||||||||
Sbjct: 71 ggctaggataaatgaatgggtagaaaaatctgactctattcacttatctcccagcctaca 130
>RF00340;SNORA36;AAIY01051702.1/1601-1471 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 131
Score = 46.1 bits (23), Expect = 5e-05
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 11 aaaatgattggataaaaaatattattctattcatttatctcccagcctaca 61
|||||||| || || |||||||||||||||||| || ||||||||||||
Sbjct: 78 aaaatgatggggtagaaaatattattctattcactttgttcccagcctaca 128
>RF00340;SNORA36;AAIY01572960.1/1835-1916 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 82
Score = 46.1 bits (23), Expect = 5e-05
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 11 aaaatgattggataaaaaatattattctattcatttatctcccagcctaca 61
||||||| ||| || |||||||||||||||||| || ||||||||||||
Sbjct: 29 aaaatgactgggtagaaaatattattctattcactttgttcccagcctaca 79
>RF00340;SNORA36;AAIY01703741.1/615-736 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 122
Score = 46.1 bits (23), Expect = 5e-05
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 11 aaaatgattggataaaaaatattattctattcatttatctcccagcctaca 61
||||||| ||| || |||||||||||||||||| || ||||||||||||
Sbjct: 69 aaaatgactgggtagaaaatattattctattcactttgttcccagcctaca 119
>RF00340;SNORA36;AAIY01139424.1/1111-986 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 126
Score = 46.1 bits (23), Expect = 5e-05
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 11 aaaatgattggataaaaaatattattctattcatttatctcccagcctaca 61
||||||| ||| || |||||||||||||||||| || ||||||||||||
Sbjct: 73 aaaatgactgggtagaaaatattattctattcactttgttcccagcctaca 123
>RF00340;SNORA36;AANN01451496.1/2498-2631 9365:Erinaceus europaeus
(western European hedgehog)
Length = 134
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 14 atgattggataaaaaatattattctattcattta 47
|||| |||||| |||| |||||||||||||||||
Sbjct: 84 atgactggatagaaaacattattctattcattta 117
>RF00340;SNORA36;AAPE01238968.1/1641-1768 59463:Myotis lucifugus
(little brown bat)
Length = 128
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 tattcatttatctcccagccta 59
||||||||||||||||||||||
Sbjct: 102 tattcatttatctcccagccta 123
>RF00340;SNORA36;AAPE01522613.1/608-478 59463:Myotis lucifugus
(little brown bat)
Length = 131
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 26 aaaatattattctattcatttatctcccagccta 59
||||| ||| |||||||||||| |||||||||||
Sbjct: 93 aaaattttactctattcatttacctcccagccta 126
>RF00340;SNORA36;ACBE01024912.1/965-1092 9685:Felis catus (domestic
cat)
Length = 128
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 36 tctattcatttatctcccagcctaca 61
|||||||||| |||||||||||||||
Sbjct: 100 tctattcattgatctcccagcctaca 125
>RF00340;SNORA36;AAQR01359701.1/751-883 30611:Otolemur garnettii
(small-eared galago)
Length = 133
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 32 ttattctattcatttatctcc 52
|||||||||||||||||||||
Sbjct: 100 ttattctattcatttatctcc 120
>RF00340;SNORA36;AANU01291083.1/11581-11450 9544:Macaca mulatta
(rhesus monkey)
Length = 132
Score = 42.1 bits (21), Expect = 7e-04
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 1 tgggctaggaaaaatgattggataaaaaatattattctattcatttatctcccagcctac 60
||||||||| | |||||||| || ||| |||||| ||||||||| ||||||||||||
Sbjct: 69 tgggctaggggagatgattgggtagaaagcattattttattcatttgcctcccagcctac 128
Query: 61 a 61
|
Sbjct: 129 a 129
>RF00340;SNORA36;ABRO01217667.1/6562-6691 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 130
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 33 tattctattcatttatctcccagcctaca 61
||||||||||||||| ||||||||||||
Sbjct: 99 tattctattcatttacttcccagcctaca 127
>RF00340;SNORA36;AAGW01556566.1/2787-2916 9986:Oryctolagus cuniculus
(rabbit)
Length = 130
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 37 ctattcatttatctcccagcctaca 61
|||||| ||||||||||||||||||
Sbjct: 103 ctattcgtttatctcccagcctaca 127
