miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00966;mir-676;AAGU02345917.1/1419-1507 9785:Loxodonta africana
(African savanna elephant)
Length = 89
Score = 97.6 bits (49), Expect = 1e-20
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 1 ctcttcaatctcaggactcgcagaattaatggaatgccgtcctaaggttggtgagtt 57
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 19 ctcttcaatctcaggacttgcagaattaatggaatgccgtcctaaggttgttgagtt 75
>RF00966;mir-676;ABRR01332325.1/3868-3956 30538:Lama pacos
(alpaca)
Length = 89
Score = 89.7 bits (45), Expect = 3e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 1 ctcttcaatctcaggactcgcagaattaatggaatgccgtcctaaggttggtgagtt 57
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 19 ctcttcaatctcaggactcgcatcattaatggaatgccgtcctaaggttgttgagtt 75
>RF00966;mir-676;ABGA01047935.1/1386-1474 9601:Pongo abelii
(Sumatran orangutan)
Length = 89
Score = 81.8 bits (41), Expect = 8e-16
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 1 ctcttcaatctcaggactcgcagaattaatggaatgccgtcctaaggttggtgagtt 57
|||||||| ||||||||| |||||||| |||||||||||||||||||||| ||||||
Sbjct: 19 ctcttcaacctcaggacttgcagaattgatggaatgccgtcctaaggttgttgagtt 75
>RF00966;mir-676;AJ278907.1/19456-19535 9913:Bos taurus (cattle)
Length = 80
Score = 73.8 bits (37), Expect = 2e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 9 tctcaggactcgcagaattaatggaatgccgtcctaaggttggtgagtt 57
|||||||||| ||| ||||||||||||||||||||||||||| ||||||
Sbjct: 18 tctcaggacttgcacaattaatggaatgccgtcctaaggttgttgagtt 66
>RF00966;mir-676;ABRP01227195.1/6870-6955 132908:Pteropus vampyrus
(large flying fox)
Length = 86
Score = 65.9 bits (33), Expect = 5e-11
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 2 tcttcaatctcaggactcgcagaattaatggaatgccgtcctaag 46
||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 20 tcttcaatctcaggagtcgcagaattagtggaatgctgtcctaag 64
>RF00966;mir-676;ABRQ01840532.1/340-428 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 65.9 bits (33), Expect = 5e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 1 ctcttcaatctcaggactcgcagaattaatggaatgccgtcctaaggttggtgagtt 57
|||||||| ||||||||| |||||||| | ||||||||||||||||||| ||||||
Sbjct: 19 ctcttcaacctcaggacttgcagaattggtagaatgccgtcctaaggttgttgagtt 75
>RF00966;mir-676;ABRT010164449.1/3693-3781 9478:Tarsius syrichta
(Philippine tarsier)
Length = 89
Score = 58.0 bits (29), Expect = 1e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 10 ctcaggactcgcagaattaatggaatgccgtcctaaggttg 50
||||||||| |||||||||| ||||||| ||||||||||||
Sbjct: 28 ctcaggacttgcagaattaaaggaatgctgtcctaaggttg 68
>RF00966;mir-676;AAYZ01448796.1/362-450 9978:Ochotona princeps
(American pika)
Length = 89
Score = 58.0 bits (29), Expect = 1e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 1 ctcttcaatctcaggactcgcagaattaatggaatgccgtcctaaggttggtgagtt 57
|||| ||| ||||||||| |||| ||||| ||||||||||||||||||| ||||||
Sbjct: 19 ctctgcaacctcaggacttgcaggattaagagaatgccgtcctaaggttgttgagtt 75
>RF00966;mir-676;AAGW01578110.1/911-823 9986:Oryctolagus cuniculus
(rabbit)
Length = 89
Score = 58.0 bits (29), Expect = 1e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 1 ctcttcaatctcaggactcgcagaattaatggaatgccgtcctaaggttggtgagtt 57
|||||||| ||||||||| |||||| ||| || |||||||||||||||| ||||||
Sbjct: 19 ctcttcaacctcaggacttgcagaactaagagagtgccgtcctaaggttgttgagtt 75
>RF00966;mir-676;CAAA01190724.1/4878-4790 10090:Mus musculus
(house mouse)
Length = 89
Score = 54.0 bits (27), Expect = 2e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 13 aggactcgcagaattaatggaatgccgtcctaaggttggtgag 55
|||||| |||||||||| ||||||||||||| |||||| ||||
Sbjct: 31 aggacttgcagaattaaaggaatgccgtcctgaggttgttgag 73
>RF00966;mir-676;AAKN02030085.1/33381-33293 10141:Cavia porcellus
(domestic guinea pig)
Length = 89
Score = 50.1 bits (25), Expect = 3e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 1 ctcttcaatctcaggactcgcagaattaatggaatgccgtcctaaggttggtgagtt 57
|||||||| || ||||||||||| | |||||||||||||||| ||||| ||||||
Sbjct: 19 ctcttcaacctgaggactcgcagggtaaatggaatgccgtcctttggttgttgagtt 75
