miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34131_ssc-mir-708:mirbase
Length = 80
Score = 121 bits (61), Expect = 6e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 6 aaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagactgtga 65
Query: 61 gcttctaga 69
|||||||||
Sbjct: 66 gcttctaga 74
>34132_ssc-mir-708:mirbase
Length = 80
Score = 121 bits (61), Expect = 6e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 6 aaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagactgtga 65
Query: 61 gcttctaga 69
|||||||||
Sbjct: 66 gcttctaga 74
>27259_eca-mir-708:mirbase
Length = 93
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
|||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct: 14 aaggagcttacaatctagctgggggtaaatgacttgcacatgaacgcaactagactgtga 73
Query: 61 gcttctaga 69
|||||||||
Sbjct: 74 gcttctaga 82
>33449_bta-mir-708:mirbase
Length = 109
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
|||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||
Sbjct: 27 aaggagcttacaatctagctgggggtaaacgacttgcacatgaacgcatctagactgtga 86
Query: 61 gcttctaga 69
|||||||||
Sbjct: 87 gcttctaga 95
>28111_mml-mir-708:mirbase
Length = 88
Score = 105 bits (53), Expect = 4e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
|||||||||||||||||||||||||| || | ||||||||||||| ||||||||||||||
Sbjct: 11 aaggagcttacaatctagctgggggtaaatgacttgcacatgaacacaactagactgtga 70
Query: 61 gcttctaga 69
|||||||||
Sbjct: 71 gcttctaga 79
>28992_hsa-mir-708:mirbase
Length = 88
Score = 105 bits (53), Expect = 4e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
|||||||||||||||||||||||||| || | ||||||||||||| ||||||||||||||
Sbjct: 11 aaggagcttacaatctagctgggggtaaatgacttgcacatgaacacaactagactgtga 70
Query: 61 gcttctaga 69
|||||||||
Sbjct: 71 gcttctaga 79
>30589_ptr-mir-708:mirbase
Length = 87
Score = 105 bits (53), Expect = 4e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
|||||||||||||||||||||||||| || | ||||||||||||| ||||||||||||||
Sbjct: 11 aaggagcttacaatctagctgggggtaaatgacttgcacatgaacacaactagactgtga 70
Query: 61 gcttctaga 69
|||||||||
Sbjct: 71 gcttctaga 79
>31237_ppy-mir-708:mirbase
Length = 88
Score = 105 bits (53), Expect = 4e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
|||||||||||||||||||||||||| || | ||||||||||||| ||||||||||||||
Sbjct: 11 aaggagcttacaatctagctgggggtaaatgacttgcacatgaacacaactagactgtga 70
Query: 61 gcttctaga 69
|||||||||
Sbjct: 71 gcttctaga 79
>32328_mmu-mir-708:mirbase
Length = 109
Score = 89.7 bits (45), Expect = 2e-19
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
|||||||||||||||||||||||||| | | ||||||| ||||| ||||||||||||||
Sbjct: 27 aaggagcttacaatctagctgggggtagatgacttgcacttgaacacaactagactgtga 86
Query: 61 gcttctaga 69
|||||||||
Sbjct: 87 gcttctaga 95
>32983_rno-mir-708:mirbase
Length = 88
Score = 89.7 bits (45), Expect = 2e-19
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
|||||||||||||||||||||||||| | | ||||||| ||||| ||||||||||||||
Sbjct: 11 aaggagcttacaatctagctgggggtagatgacttgcacttgaacacaactagactgtga 70
Query: 61 gcttctaga 69
|||||||||
Sbjct: 71 gcttctaga 79
