miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00655;mir-28;AAEX02028916.1/2970-3062 9615:Canis lupus
familiaris (dog)
Length = 93
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 21
Query: 61 gcttctaga 69
|||||||||
Sbjct: 20 gcttctaga 12
>RF00917;mir-708;ABRQ01033298.1/1355-1442 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 113 bits (57), Expect = 3e-25
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
|||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct: 11 aaggagcttacaatctagctgggggtaaaagacttgcacatgaacgcaactagactgtga 70
Query: 61 gcttctaga 69
|||||||||
Sbjct: 71 gcttctaga 79
>RF00655;mir-28;ABRQ01033298.1/1444-1352 9813:Procavia capensis
(cape rock hyrax)
Length = 93
Score = 113 bits (57), Expect = 3e-25
Identities = 66/69 (95%)
Strand = Plus / Minus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
|||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct: 80 aaggagcttacaatctagctgggggtaaaagacttgcacatgaacgcaactagactgtga 21
Query: 61 gcttctaga 69
|||||||||
Sbjct: 20 gcttctaga 12
>RF00917;mir-708;AAYZ01001621.1/4751-4664 9978:Ochotona princeps
(American pika)
Length = 88
Score = 89.7 bits (45), Expect = 4e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
|||||||||||||||||||||||| |||| | ||||||| |||| ||||||||||||||
Sbjct: 11 aaggagcttacaatctagctggggctgaatgacttgcacgagaacacaactagactgtga 70
Query: 61 gcttctaga 69
|||||||||
Sbjct: 71 gcttctaga 79
>RF00655;mir-28;AAYZ01598458.1/215-123 9978:Ochotona princeps
(American pika)
Length = 93
Score = 89.7 bits (45), Expect = 4e-18
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
|||||||||||||||||||||||| |||| | ||||||| |||| ||||||||||||||
Sbjct: 80 aaggagcttacaatctagctggggctgaatgacttgcacgagaacacaactagactgtga 21
Query: 61 gcttctaga 69
|||||||||
Sbjct: 20 gcttctaga 12
>RF00917;mir-708;ABRP01067784.1/10295-10387 132908:Pteropus
vampyrus (large flying fox)
Length = 93
Score = 83.8 bits (42), Expect = 2e-16
Identities = 66/74 (89%), Gaps = 5/74 (6%)
Strand = Plus / Plus
Query: 1 aaggagcttacaatctagctgggggtgaacgg-----cttgcacatgaacgcaactagac 55
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 11 aaggagcttacaatctagctgggggtaaactaaacaacttgcacatgaacgcaactagac 70
Query: 56 tgtgagcttctaga 69
||||||||||||||
Sbjct: 71 tgtgagcttctaga 84
>RF00655;mir-28;AAGV020456123.1/438-346 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 93
Score = 73.8 bits (37), Expect = 2e-13
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 1 aaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagactgtga 60
|||||||||||||||||||||||||||| | | |||||| || | ||||||||||| ||
Sbjct: 80 aaggagcttacaatctagctgggggtgagagacctgcacaggatctcaactagactggga 21
Query: 61 gcttctaga 69
|||||||||
Sbjct: 20 gcttctaga 12
