miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054366.1/427-503 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 137 bits (69), Expect = 2e-32
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 4 ggtacatgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacctggtc 63
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 1 ggtacatgagatggttgaccagagagcacacgctttatttatgacgtttgtgacctggtc 60
Query: 64 cactaaccctcagtatc 80
|||||||||||||||||
Sbjct: 61 cactaaccctcagtatc 77
>RF00641;mir-154;AAGU02503119.1/1083-1160 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 125 bits (63), Expect = 9e-29
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 10 tgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacctggtccactaa 69
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 8 tgagatggttgaccagagagcacacgctttatttatgacgtttgtgacctggtccactaa 67
Query: 70 ccctcagtatc 80
|||||||||||
Sbjct: 68 ccctcagtatc 78
>RF00641;mir-154;AAYZ01216262.1/1115-1191 9978:Ochotona princeps
(American pika)
Length = 77
Score = 103 bits (52), Expect = 3e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 10 tgagatggttgaccagagagcacacgctttatttgtgccgtttgtgacctggtccactaa 69
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 7 tgaggtggttgaccagagagcacacgctgtatttgtgccgtttgtgacctggtccactga 66
Query: 70 ccctcagt 77
|||||||
Sbjct: 67 acctcagt 74
>RF00641;mir-154;ABRQ01054364.1/4611-4690 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 33 acgctttatttgtgccgtttgtgacctggtccactaaccctcagtatc 80
||||||||| |||| ||| ||| || |||||||||||||||||||||
Sbjct: 33 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 80
