miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33461_bta-mir-875:mirbase
Length = 77
Score = 131 bits (66), Expect = 7e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4 gtgggactatacctcagttttatcaggtgttatttaaaatcacctggaaatactgaggtt 63
Query: 61 gtgtttcactgaac 74
||||||||||||||
Sbjct: 64 gtgtttcactgaac 77
>31250_ppy-mir-875:mirbase
Length = 76
Score = 123 bits (62), Expect = 2e-29
Identities = 72/74 (97%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4 gtggtactatacctcagttttatcaggtgttctt-aaaatcacctggaaatactgaggtt 62
Query: 61 gtgtttcactgaac 74
|||| |||||||||
Sbjct: 63 gtgtctcactgaac 76
>31251_ppy-mir-875:mirbase
Length = 76
Score = 123 bits (62), Expect = 2e-29
Identities = 72/74 (97%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4 gtggtactatacctcagttttatcaggtgttctt-aaaatcacctggaaatactgaggtt 62
Query: 61 gtgtttcactgaac 74
|||| |||||||||
Sbjct: 63 gtgtctcactgaac 76
>30606_ptr-mir-875:mirbase
Length = 75
Score = 121 bits (61), Expect = 7e-29
Identities = 71/73 (97%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4 gtggtactatacctcagttttatcaggtgttctt-aaaatcacctggaaatactgaggtt 62
Query: 61 gtgtttcactgaa 73
|||| ||||||||
Sbjct: 63 gtgtctcactgaa 75
>28127_mml-mir-875:mirbase
Length = 76
Score = 115 bits (58), Expect = 4e-27
Identities = 71/74 (95%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 4 gtggtactatacctcagttttatcaggtgttcct-aaaatcacctggaaatactgaggtt 62
Query: 61 gtgtttcactgaac 74
|||| |||||||||
Sbjct: 63 gtgtctcactgaac 76
>28128_mml-mir-875:mirbase
Length = 76
Score = 115 bits (58), Expect = 4e-27
Identities = 71/74 (95%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 4 gtggtactatacctcagttttatcaggtgttcct-aaaatcacctggaaatactgaggtt 62
Query: 61 gtgtttcactgaac 74
|||| |||||||||
Sbjct: 63 gtgtctcactgaac 76
>29013_hsa-mir-875:mirbase
Length = 76
Score = 115 bits (58), Expect = 4e-27
Identities = 71/74 (95%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 4 gtggtactatacctcagttttatcaggtgttc-ttaaaatcacctggaaacactgaggtt 62
Query: 61 gtgtttcactgaac 74
|||| |||||||||
Sbjct: 63 gtgtctcactgaac 76
>29014_hsa-mir-875:mirbase
Length = 76
Score = 115 bits (58), Expect = 4e-27
Identities = 71/74 (95%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 4 gtggtactatacctcagttttatcaggtgttc-ttaaaatcacctggaaacactgaggtt 62
Query: 61 gtgtttcactgaac 74
|||| |||||||||
Sbjct: 63 gtgtctcactgaac 76
>32365_mmu-mir-875:mirbase
Length = 78
Score = 111 bits (56), Expect = 7e-26
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
Sbjct: 4 gtggtactatacctcagttttatcaggtgttcattaaaatcacctgaaaatactgaggct 63
Query: 61 gtgtttcactga 72
|||||||||||
Sbjct: 64 atgtttcactga 75
>32366_mmu-mir-875:mirbase
Length = 78
Score = 111 bits (56), Expect = 7e-26
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
Sbjct: 4 gtggtactatacctcagttttatcaggtgttcattaaaatcacctgaaaatactgaggct 63
Query: 61 gtgtttcactga 72
|||||||||||
Sbjct: 64 atgtttcactga 75
>31566_oan-mir-875:mirbase
Length = 79
Score = 99.6 bits (50), Expect = 3e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
||||||| |||||||||| |||||||||||||||| || |||||||| ||||||||||||
Sbjct: 6 gtggtacaatacctcagtcttatcaggtgttctttcaattcacctggcaatactgaggtt 65
Query: 61 gtgtttcactgaac 74
|||| |||||||||
Sbjct: 66 gtgtctcactgaac 79
>27463_mdo-mir-875:mirbase
Length = 75
Score = 95.6 bits (48), Expect = 4e-21
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
||||||| |||||||||| |||||||||||| |||||||||||||||||| ||||||||
Sbjct: 4 gtggtacaatacctcagtcttatcaggtgttaattaaaatcacctggaaatgctgaggtt 63
Query: 61 gtgtttcactga 72
| ||||||||||
Sbjct: 64 gcgtttcactga 75
>33002_rno-mir-875:mirbase
Length = 73
Score = 83.8 bits (42), Expect = 2e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgagg 58
|||||||||||||||||||||||||||||||| || |||||||||| ||| |||||||
Sbjct: 4 gtggtactatacctcagttttatcaggtgttcattcaaatcacctgaaaacactgagg 61
