miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00933;mir-875;ABRQ01087343.1/1920-1844 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 131 bits (66), Expect = 1e-30
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 63
Query: 61 gtgtttcactgaac 74
|||| |||| ||||
Sbjct: 64 gtgtctcaccgaac 77
>RF00933;mir-875;CAAA01125963.1/23910-23986 10090:Mus musculus
(house mouse)
Length = 77
Score = 111 bits (56), Expect = 1e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
Sbjct: 4 gtggtactatacctcagttttatcaggtgttcattaaaatcacctgaaaatactgaggct 63
Query: 61 gtgtttcactga 72
|||||||||||
Sbjct: 64 atgtttcactga 75
>RF00933;mir-875;AAFR03006570.1/12434-12510 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 77
Score = 99.6 bits (50), Expect = 5e-21
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
||||||| |||||||||| |||||||||||| |||||||||||||||||| ||||||||
Sbjct: 4 gtggtacaatacctcagtcttatcaggtgttaattaaaatcacctggaaatgctgaggtt 63
Query: 61 gtgtttcactgaac 74
| ||||||||||||
Sbjct: 64 gcgtttcactgaac 77
>RF00933;mir-875;AAWZ01028772.1/75719-75643 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 75.8 bits (38), Expect = 7e-14
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 1 gtggtactatacctcagttttatcaggtgttctttaaaatcacctggaaatactgaggtt 60
||||||| ||||||||| |||||||||||| | || | |||||||||| ||||||||||
Sbjct: 4 gtggtacaatacctcagccttatcaggtgttgtatatattcacctggaagtactgaggtt 63
Query: 61 gtgtttcactgaac 74
| ||||||||||||
Sbjct: 64 gagtttcactgaac 77
