miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>34147_ssc-mir-1307:mirbase
          Length = 80

 Score =  119 bits (60), Expect = 2e-28
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgaccggacctcgaccggctcgtctatgttgccaatcgactcggcgtggcgtcggtcgtg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 cgaccggacctcgaccggctcgtctatgttgccaatcgactcggcgtggcgtcggtcgtg 70

>29174_hsa-mir-1307:mirbase
          Length = 149

 Score =  111 bits (56), Expect = 5e-26
 Identities = 59/60 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgaccggacctcgaccggctcgtctatgttgccaatcgactcggcgtggcgtcggtcgtg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 42  cgaccggacctcgaccggctcgtctgtgttgccaatcgactcggcgtggcgtcggtcgtg 101

>30724_ptr-mir-1307:mirbase
          Length = 148

 Score =  111 bits (56), Expect = 5e-26
 Identities = 59/60 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgaccggacctcgaccggctcgtctatgttgccaatcgactcggcgtggcgtcggtcgtg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 42  cgaccggacctcgaccggctcgtctgtgttgccaatcgactcggcgtggcgtcggtcgtg 101

>31365_ppy-mir-1307:mirbase
          Length = 149

 Score =  111 bits (56), Expect = 5e-26
 Identities = 59/60 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgaccggacctcgaccggctcgtctatgttgccaatcgactcggcgtggcgtcggtcgtg 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 42  cgaccggacctcgaccggctcgtctgtgttgccaatcgactcggcgtggcgtcggtcgtg 101

>33488_bta-mir-1307:mirbase
          Length = 149

 Score =  111 bits (56), Expect = 5e-26
 Identities = 59/60 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgaccggacctcgaccggctcgtctatgttgccaatcgactcggcgtggcgtcggtcgtg 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 42  cgaccggacctcgaccggctcgtctatattgccaatcgactcggcgtggcgtcggtcgtg 101